Protein Info for PP_5122 in Pseudomonas putida KT2440

Annotation: Oxidoreductase, GMC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 532 PF00732: GMC_oxred_N" amino acids 78 to 297 (220 residues), 203.5 bits, see alignment E=5.9e-64 PF05199: GMC_oxred_C" amino acids 381 to 516 (136 residues), 78.6 bits, see alignment E=1.1e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_5122)

Predicted SEED Role

"FIG022869: Oxidoreductase, GMC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88CQ8 at UniProt or InterPro

Protein Sequence (532 amino acids)

>PP_5122 Oxidoreductase, GMC family (Pseudomonas putida KT2440)
MPVPDPFRQGLERGWITHDASRLEHDLFLEADIAVIGSGAGGATSAQMLSAAGFKVLLIE
EGPLKTSSDFHLLESEAYASLYQEGLGRMSKDGAITILQGRAVGGTTLVNWTSSFRTPPQ
TLAHWASVHGVNGLGEDELRPWFERMEQELGISPWALPPNANNDVLRRGCEQLGYRWGVI
PRNVRGCWNLGYCGMGCPVNAKQSMLVTRIPATLEQGGELLYLARAERFAHNGERIQSLT
CQALDAQGIHPTGRQVSVQARHYLLAGGGINSPALLLRSAAPDPHGRLGKRTFLHLVNFS
AARFSERIDPYYGAPQSIYSDHFQWQDGADGPVGYKLEVPPLHPALASTLLGGQGHENAQ
RMAELPHTHVMLALLRDGFHPESQGGSVELRGDGSPVLDYPVTDYLRDGLRRAYRSMAHV
QFAAGATHVTPVHSDASAASSLEQALTMIDKLRLEPFRTRLGSAHVMGGCALGEDPRHAV
CDSLGRHHQLENLSIHDGSLFPTSIGANPQLSVYAISARLSEALVSRLAHSA