Protein Info for PP_5092 in Pseudomonas putida KT2440

Annotation: putative exported NLP/P60 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF00877: NLPC_P60" amino acids 86 to 194 (109 residues), 117.3 bits, see alignment E=1.4e-38

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_5092)

Predicted SEED Role

"NLP/P60 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88CT8 at UniProt or InterPro

Protein Sequence (207 amino acids)

>PP_5092 putative exported NLP/P60 protein (Pseudomonas putida KT2440)
MPPLIKTWLTLCLLLPLAAHATNREQRLPNGFTGYTTNASVKRAPVKQTALRARPGNAAS
SRGANVAAMSPKQSSDVLSRAVNVLGTPYVWGGSSPKKGFDCSGLVKYAFNDVADVDLPR
TSNAMARGHGVKVAKGDLKPGDLIFFNIKSRRVNHVAIYLGNDRFIHAPRRGKRVSIDTL
SKPYWQKHYVVAKRVLPKEQQLSLAKR