Protein Info for PP_5060 in Pseudomonas putida KT2440

Annotation: conserved protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1571 transmembrane" amino acids 707 to 728 (22 residues), see Phobius details PF20178: ToxA_N" amino acids 380 to 611 (232 residues), 93.7 bits, see alignment E=7.6e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_5060)

Predicted SEED Role

"FIG00958876: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88CX0 at UniProt or InterPro

Protein Sequence (1571 amino acids)

>PP_5060 conserved protein of unknown function (Pseudomonas putida KT2440)
MWFIPQRVLVMPATHAHNLNHAVAAQFASRPTLRQVVGEQVMKVILEHYPLVGVHRPEMT
SAAPLYLMSLQPDGVWRPQPLVDVVLQALLAAKPLDLAPAGDYRLSLNPPRRFFAIESSF
ETAEGDLIEPARLTDGLNALLPMLLWHFQQAQIDYWNGDGTIDRDLWLQQLLRANLLDGL
KDEALDDEQRKLLRDLMMGNRTGLDVQLVRVALREGEDTFHELLPGLLITASSEVRELTL
WCSPEGLVRSFDAQAAFGAALQIQMAGRYRFDELSWQGLTVEGDAFALYSASLLEILLER
VARLRWSAIDSVDQLEHYCHLACDPASFFAEFSDHGTGGLGLALPKGLSRADTDSQTAYL
QAMLDLSLLQQHSPAQGIQDGLPDLHTYAATRLREAMLHDHPVDANYFPDDILLTVETFV
SDGHGLGFGQKSGEKTLTLTQLAIGRLDATAGGVVTHIAHRENQLIMKWMTIDYVRELVQ
RVDIGGSYPRHVQSMLDRSASRAEHISAFAIRWRITLMFDAARARAVKRLDKFAYGALAE
FCRSGAQGAAAVRIAPLAFKRSPTSERVDVAHGFYVIELIELGVHLLYCPLYTEKALIQY
DSAQALLDAISRPGALQDNVLLWIEQAQRAVYDNGGFREPHLPQWLLDPYTLPEKPQPVQ
LALQFWARDVDRQMFEAKGRMLLELADRSAMSNSEVRWRLVTAFSWELLNVVFPVLPGPL
TSVAWLYIGMRSLINDVQGLASSHLDERIQAMVDVLNNTLLALIHLQTPKLAAPPVSGDL
PPSLLQGPAAGDGIELANLSTATREPSVSVDSLQAMANTHLDFSWRGAGGLNGLSSAQRG
QMRALAASVSLEGRAPQTQGVAAGLVRIGDYFYVSLDGDVYRVSLDNAAFRIIGPDGTVG
PYLMRDGNVWHLNNSRLHGGNDRSGELARERLRKKLDGPIAKAQAEIERLILAAEAATKD
FNALSEQIVGLRDPVKKVEERLQKAPPTEPGERAQFEQATELFKLKFQQLQEQTSKLRNQ
RLPLNERLFLDYLEAERNITYVLDKSSASTHVGSVRDQRILLGQVRKNLISFGMFFIDEL
LALGGFREYDQLTNALNVAPPEKQAELYARFRTMLEKLLEEQPRIINVSSQLDRLLAITD
IDMQVPYVNTTLTVSSIIASRKTTTINIRFFQAMGLVELALQWHKGTPTQHYMIFRHALA
SQRLRVAAQTHHLLMFCDLPVAERIEVLQSAWDEYLAAILNAERIKTLGSKLIDVQRLEA
YKQQMVELKTIAGEALVEAMREQADGQVRGSRRAVYSRKSLQVAHTRAGQIVIGSESVVD
GQAVLQVVAAFNKSALHRFQKQGNTWVEEVAAGEPEQQSRTSTPESERNNRELAEAMLAQ
NENVIAQARALVAKDADDMGLMSMLDGQINEVSELREQLSDANAEHALLAGMDDALIQLR
QARRDCLVALYSKTRYPGARGLNFLHQQGLLAVEYVGPRQVVSDGYLDEYRISLLRAPGE
GRGKPLWAAHFHFADSQAAPTAFGKGHLKLWSQRKMGYREQMKAASEGQVLSIYRGNLTY
AQARDVIPFNL