Protein Info for PP_4924 in Pseudomonas putida KT2440

Annotation: Serine protease, subtilase family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1805 PF00353: HemolysinCabind" amino acids 561 to 572 (12 residues), 7.2 bits, see alignment (E = 0.0017) amino acids 563 to 597 (35 residues), 16.3 bits, see alignment (E = 2.4e-06) amino acids 659 to 689 (31 residues), 15 bits, see alignment (E = 6e-06) amino acids 695 to 729 (35 residues), 21.6 bits, see alignment (E = 5.1e-08) amino acids 712 to 746 (35 residues), 20.4 bits, see alignment (E = 1.2e-07) amino acids 722 to 747 (26 residues), 11.2 bits, see alignment (E = 9.3e-05) amino acids 1489 to 1507 (19 residues), 8.8 bits, see alignment (E = 0.00054) PF17892: Cadherin_5" amino acids 817 to 891 (75 residues), 30.1 bits, see alignment (E = 1.1e-10) PF17963: Big_9" amino acids 818 to 893 (76 residues), 25.5 bits, see alignment (E = 6.2e-09) PF00082: Peptidase_S8" amino acids 960 to 1226 (267 residues), 95.7 bits, see alignment E=9.7e-31 PF01483: P_proprotein" amino acids 1298 to 1392 (95 residues), 70.2 bits, see alignment 3.9e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_4924)

Predicted SEED Role

"Furin precursor (EC 3.4.21.75)" (EC 3.4.21.75)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.4.21.75

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88DA3 at UniProt or InterPro

Protein Sequence (1805 amino acids)

>PP_4924 Serine protease, subtilase family (Pseudomonas putida KT2440)
MIRIELSDVDEARQALRDKGPDAMYDVLAKKGDKYAVLANGVARGDSLSGVAAINYMKSV
AAGVGRPMQEIDVDKVRVEMANKYMEVLLKKISKGPIVGQVSQKEVAAFHKETFESLEYP
ERAWTLSPVFDVIAVENREDYWRHVLSSAGNLTDEFTLSFHTHRMMAMASVVSSAENRLI
AKEWISRVESPTGVPDLISAAAASLFNSINNAFKAASHFDNATDQTLQIEITPTTESRRD
LQGQDDIRNDVSNGYVDRRLTHSIAFTDSTLDNTDFTSAQLGSLATGGVRPGELQIDPNV
RPNQHLAQFYRDGNEQPDFSLRNAVVLNGLAAMTTVNTFVDPLLLDLSGKGVGLTGIEEG
VLFDIDNSGSLRRTGWADRLTGMLVHDNGTGQVSNVSQLFSEYYGGKAGSDGSSGETPFK
DGFAALASVDANADGVINVEDAVWAQLKVWVDGNHDGRADAGELRALQEHGISQIKLGQV
EPVGEVRQGNEVISRGAFTVNGEDREVLAVRFLADTVGNRIEAQEGGTLLTSSSGPTSRR
AYISQSAQGSTLDAAALGVQTLYGSAGDDVLTAAPEGSWLVGGGGSNTYHGGAGDDVFVI
SASDDWANMQGNGGRDTALIVGEHGVGLNMAKAGLTIAQGGRGKDIIASGGQRGVFIKGG
SGDSLLIGGGGNDVLVGGTGRNDIIGGTGKSVIYAGPKGDRIQASAGGSIIYAGGGADRI
TGGAADDVIEAGRGDATIDGGAGTNLVSLHGAHDEYLITRTESGHLITDTVAGRDGRLSL
SNIQKLSFADIAAIDLLGGGAMPIGDRLSPEQLATFATTDTALIVPATALLGNDQPLGSS
GPLRIASVSAGKGATVRLNEQGDVEVTPLPGHDGDVSFRYDLVDAAGNASMSVTEVGSAA
SAPLRATVTLRHEQSPADPLSGRQWYLDEINVAPVWHDFTGKGVRIGQFEPGGEFAVAPE
IFDIGHPDLKPNIDPIWLQTQRTNGTLPALASNHATQVAGVMVGARNDQGGIGIAYEAKI
GGHYLANKGDDLTNLGQMVNYDIANNSWGFKTDFGLTNVPEGKVDTALALAFSTTLAATN
GRGGLGTIVVASGGNQRHKGGNAQGSLTNNNRHAIEVAAINAKADLSVLQAATAPFSNPG
SSLLVAAPGSHVLSSGVSLEAERGASVGSAYSTTQGTSFAAPIVSGVVALMLQANPGLGY
RDVQQILALSARKVDDASTQWAYNAGRNWNGGGMHASHDYGFGMIDARAAVRLAESWGSR
ATKANERLLTASSEPVAQQVAAGQVATLSLTLPADLLVEHVEVDVHSMVGRLGDMTLTLV
SPGGTRSVLLDRTGKAPGSGDDDLGDSRSGAFKYGFMSTHHRAERSAGEWKLEVRNAVAG
LPLTLDRWTLRLVGSPGTTDDVYYFTDDYANLVAENPGRAKLDDAISGTAGGRNTLNAAA
VSRSISVDLASGSASIAGAALTIAPGSVQNLISGDGDDTLIAGPAGALLDGGRGYNLLKG
GEGTDRFVIHRRAGGNDVLKQFETSREVIDLVGFGGSGFADLQMQQDGNSTVLDLGSGQK
LTLADTTIAELRSANFRFLDAFTAAPGYFEGSPEEQTTPPVSANVLLTGGAGGVSLASDA
SGQLVASLAGTIYSPPTVAPSVFLVTKQEGVSDYKNTLRGFRHGIDKIDLTQVGISRFED
LHVSKVQRFKLNDFAQIHGVAVDTQAVPGQEGIVKMLYLDALEVAQVTAEDFIFAQPAMV
TSEAVAVPEISALSAGSSLFAVEHSLPSLGNLVDAMAAFAPEPAGPVLIGDMSAQRIDST
IAVAA