Protein Info for PP_4847 in Pseudomonas putida KT2440

Annotation: chaperone modulatory of CbpA co-chaperone protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 101 PF13591: MerR_2" amino acids 11 to 93 (83 residues), 77.1 bits, see alignment E=3.5e-26

Best Hits

Swiss-Prot: 100% identical to CBPM_PSEPK: Chaperone modulatory protein CbpM (cbpM) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: None (inferred from 98% identity to ppf:Pput_4725)

Predicted SEED Role

"Chaperone-modulator protein CbpM" in subsystem Protein chaperones

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88DH8 at UniProt or InterPro

Protein Sequence (101 amino acids)

>PP_4847 chaperone modulatory of CbpA co-chaperone protein (Pseudomonas putida KT2440)
MSSTLIVQLDMRTLCQEADVTAECVIEIVEHGIVEPSGRTPEDWLFDDQAPLVTKRAVKL
HQELELEWEGVALALELLQEVQQLRSENSMLKQRLGRFIQL