Protein Info for PP_4843 in Pseudomonas putida KT2440

Annotation: putative Urea ABC transporter, permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 359 transmembrane" amino acids 17 to 39 (23 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 73 to 93 (21 residues), see Phobius details amino acids 104 to 121 (18 residues), see Phobius details amino acids 127 to 150 (24 residues), see Phobius details amino acids 157 to 175 (19 residues), see Phobius details amino acids 205 to 223 (19 residues), see Phobius details amino acids 253 to 274 (22 residues), see Phobius details amino acids 294 to 315 (22 residues), see Phobius details amino acids 326 to 346 (21 residues), see Phobius details TIGR03408: urea ABC transporter, permease protein UrtC" amino acids 44 to 352 (309 residues), 444.4 bits, see alignment E=1.5e-137 PF02653: BPD_transp_2" amino acids 51 to 341 (291 residues), 159.7 bits, see alignment E=4.3e-51

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to ppu:PP_4843)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtC" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88DI2 at UniProt or InterPro

Protein Sequence (359 amino acids)

>PP_4843 putative Urea ABC transporter, permease protein (Pseudomonas putida KT2440)
MNQPLLVTATQKAGPRLTLAIGAVVVLLLVALPLCSLLPADHALHVSAYTLTLVGKILCY
AIVALALDLVWGYAGLLSLGHGLFFALGGYAMGMYLMRQAAGDGLPGFMTFLSWTELPWY
WAGTQHFAWALCLVVLAPGLLALVFGWFAFRSRIKGVYFSIMTQALTFAGMLLFFRNETG
FGGNNGFTSFRTILGFDIAAQGTRAVLFLLTVALLLASLYLCWRLTRSKFGRLLTAVRDA
ENRMMFCGYDPRGFKLLVWVLSAVLCGLAGALYVPQVGIINPSEMSPTNSIEAAVWVALG
GRGTLIGPLLGAGLVNGMKSWFTVAFPEFWLFFLGALFILVTLYLPKGVVGLLKKRSQP