Protein Info for PP_4745 in Pseudomonas putida KT2440

Annotation: transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 510 PF13007: LZ_Tnp_IS66" amino acids 36 to 106 (71 residues), 58.8 bits, see alignment E=1.4e-19 PF13005: zf-IS66" amino acids 116 to 157 (42 residues), 45.4 bits, see alignment 1.7e-15 PF03050: DDE_Tnp_IS66" amino acids 172 to 457 (286 residues), 356.2 bits, see alignment E=2.9e-110 PF13817: DDE_Tnp_IS66_C" amino acids 464 to 502 (39 residues), 62.8 bits, see alignment 5.3e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_4091)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (510 amino acids)

>PP_4745 transposase (Pseudomonas putida KT2440)
MISVPDNLPDDPAALKLLLAQLLAERTVDKGQIVDLKEQVKLLRDRLFNRKSEQTVESNT
PQLALFNEPESQWVPTADDADEEVVAPSKQRGKRKPLSADLPRIEVIHDLPEHELTCACG
CRKHVVGEQTSEQLDIVPMQIRVLKHVRKIYGCRGCETAPVTADKPAQLIEKSMASPSVL
AMLLTTKYVDGLPLHRFETVLNRHGIEIPRQTLARWVIQCSEHFQPLLNLMRDRLLESPV
IHCDETRVQVLKEPDRDPTSQSWMWVQASGPPDRQVVLFDYTTSRAQEVPLRLLEGYRGY
VMTDDYAGYNALALQPGVERLACMAHVRRKFVEAQKVQPKGKSGRADVALTMINKLYGIE
RDLKDASDEQRFIGRQERSLPILEQLKSWLDKTHSQVTPQSVLGKAVLYLANNWNRLERY
VEAGHLPIDNNLAERAIKPFVIGRKAWLFSDTPKGATASAQIYSLVETAKVNGQEPYTWL
RHVLERLPHASSVADYEALLPWNCSPEMPR