Protein Info for PP_4704 in Pseudomonas putida KT2440

Annotation: conserved protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 978 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF05359: DUF748" amino acids 4 to 350 (347 residues), 298.2 bits, see alignment E=2.2e-92 amino acids 350 to 953 (604 residues), 743.1 bits, see alignment E=8.9e-227

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_4704)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88DW4 at UniProt or InterPro

Protein Sequence (978 amino acids)

>PP_4704 conserved protein of unknown function (Pseudomonas putida KT2440)
MYKGLTRAAGAIVALVALYSLLGFLILPGVALRIANQQLAQYATVPAHLERIELNPFSLE
LTLWGLQIGEPGKEQVGFERLYANASLDSLWTKALHLEAVELDKPRNEVLFAKDGTLNLT
GLFKLPASEAKPEEPPSDPFPLRIGSIKLIDGYLHFEDLRPSEPIEFLYDNMNLELKNLS
TLPNDNADMTLVASGPNGGRIDWKGTLSLSPIASEGTLKVTDGKMKLFWPYVRDAVPLVL
EDGVVSLDTHYKLNLAKQTELLLDNVSVRIAPFAIKAPDGRPLARLASLEVSETSIDLVK
QQVTVGKVRSEKLETWAALEKDGQLDWQKLFASQPTKATPKEKAEPAAAEPTPEEKAAKE
PSKPWQVLLKDVQLRNYLVHLADRSQKEPVALDIGPLNADLQGFDSLNQSPFTLKLDTGV
GKQGKLQAAGQVNLAPIWAKLDVSTRDIDLRVAQAYISPFILLELRSGMLSSDLKVDLKN
TAPLAFNVTGKAQVSQLHTLDTIKSRDFVKWQQVNVDGLSYVHGDALSIDKVTLLQPYAR
FIINEDRTTNVNDLLIPQPADAPASSQPKPTTASNNKPLGIHIGQIDINDGSANFADLSL
TPNFATAIQQLNGQIGTIDNRKPQPAKVDVKGKVDRYAPVTIKGALNPFNPLASLDIATS
FKRVELTTLTPYSGKFAGFRIRKGRLNLDLHYLITNGQLKAENKVVVEQLQLGEKVDSPD
AVDLPIRLAVALLKDTEGKISIELPVSGDLNNPQFSVMPIVWQTLRNLVLRAAQAPFKFI
GGLISGGSSEDLGNVAFAPGSSELSGEAQSSLDKLASALKERPELRLEIEGTSAQASDGP
LIAQQRLEREYQATWYKILQRRGDKVPANASMLVVDDSDKPAMLEGIYRTRLKQQPPAEW
EQLGRDERAAKLREAVIKSWAESTALLRTLGQERASSIKDYLVDKGKLEDDRVYFIDTSL
GQPQSDGRVVTPMHLDAE