Protein Info for PP_4674 in Pseudomonas putida KT2440

Annotation: ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease, recombinase subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1160 TIGR01450: exodeoxyribonuclease V, gamma subunit" amino acids 11 to 1106 (1096 residues), 1239.9 bits, see alignment E=0 PF04257: Exonuc_V_gamma" amino acids 11 to 366 (356 residues), 344.3 bits, see alignment E=6.9e-107 PF17946: RecC_C" amino acids 848 to 1088 (241 residues), 166.7 bits, see alignment E=6.3e-53

Best Hits

KEGG orthology group: K03583, exodeoxyribonuclease V gamma subunit [EC: 3.1.11.5] (inferred from 100% identity to ppu:PP_4674)

Predicted SEED Role

"Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88DZ4 at UniProt or InterPro

Protein Sequence (1160 amino acids)

>PP_4674 ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease, recombinase subunit (Pseudomonas putida KT2440)
MLNTAHLHPGFMIVHGNRLDDLRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPLEDDQGGCGIAAAIDVQLPGSFMWQLYRSVLGRSEIPEVSLLDKAPLTWRLMRLLPAL
IERPHFEPLRRFLTDDSDLRKRYQLAERLADLFDQYQVYRADWLKDWATGEHVINTARGE
RKVLPPGNRWQAELWRALLEDVGEQGMAQSRAGVHQRFIERINSLEQAPAGLPPRVIVFG
ISSLPAQALEALAGLSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQL
DDQTLHQHAHPLLAAWGKQGRDYINLLDSYDDPGSYQGVFSDGRIDLFSDGSPTTLLNEL
QDDILELRPLAESRERWPAVDTTKDRSIRFHIAHSPQREVEILHDQLLARFSADPTLRPR
DVIVMLPDIDTYAPHIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSR
FAVSEVLDLLDVPAVRARFGIRENDLPTLHRWIEGAGIRWGLDAAQRASLGLPAGLEQNS
WRFGLRRMLLGYAVGVGEACDGIEPYDEIGGLDAALIGPLVALLDALEVACQALSEPATV
SQWGERLHALLHVFFLAEDEGDEFLLMQLQDLRDSWLEVCETVGLHDPLPLTVVREAWLS
GLDQGKLSQRFLAGSVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQPPLDFDLMASDYRP
GDRSRREDDRYLLLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHIAAGWHLAD
AQQGQPARPGEQLLHALTQEHPLQPFSPRYFQKGSPLFSYAHEWQVLHQQGETDAQSEPG
LPPYQDAEALSLHQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDTLQRYGASE
SLLGAALAEPDNAEQALRAQARRLQACGLLPLAGFGELLQNELIEPLPDLLQRHQQLLQR
WPQLVEGALPVHFEHGQHRLEGWLGRVFQAEDQSLLSITTVPNTISAGRNNLKWHRLIAP
WVTHLAACAAGYPYNSALVASDLTLLLAPLPQAQAAQLLGDLLVARQAAMNAPLPVAAKT
AFAWLAQDDADKALAAAARAYEGDERTSFGERSESIALARQFRDFAALTADETFEGWCET
LYRPLFTAPWQTLGNPEKGA