Protein Info for PP_4652 in Pseudomonas putida KT2440

Annotation: putative Membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 transmembrane" amino acids 16 to 41 (26 residues), see Phobius details amino acids 47 to 68 (22 residues), see Phobius details amino acids 80 to 98 (19 residues), see Phobius details amino acids 107 to 123 (17 residues), see Phobius details amino acids 143 to 166 (24 residues), see Phobius details amino acids 172 to 192 (21 residues), see Phobius details amino acids 221 to 245 (25 residues), see Phobius details amino acids 257 to 275 (19 residues), see Phobius details amino acids 287 to 320 (34 residues), see Phobius details amino acids 369 to 393 (25 residues), see Phobius details PF05977: MFS_3" amino acids 13 to 388 (376 residues), 112.9 bits, see alignment E=1.5e-36 PF07690: MFS_1" amino acids 19 to 354 (336 residues), 101.5 bits, see alignment E=4.7e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppf:Pput_4514)

Predicted SEED Role

"MFS general substrate transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88E16 at UniProt or InterPro

Protein Sequence (406 amino acids)

>PP_4652 putative Membrane protein (Pseudomonas putida KT2440)
MSDSAPQLLRHHRPFLAFWLARVFTASGFQMLTVAIGWHLYQLTGNVLDLGLVGLVEFAP
RVLFMLHTGHVADRYDRRKVAALCQSLQGLIALALAVGSATDNVTRELIFALAFLLGASR
SFEMPATQALLPNVVPAGLFPRAVAASASATQSATIVAPAVGGFLYAFGSMWVYGPTVAL
YAIACVLTLSLQARGQVAQRGRASIESLLAGIRFIRSRPDILGAISLDLFAVLLGGATAL
LPVFAKDILLTGPMGLGLLRSAPAVGALLMSLWLARFPFQRNVGRTMFTAVGVFGVATIA
FGLSTSFWFSLAVLVVLGAADMISMVIRSSFVQLETPDEMRGRVSAVNGLFIGASNQLGE
FESGVTAHWFGTVPAVVLGGVGTLVVTGVWIKLFPTLAKRDRLHNG