Protein Info for PP_4623 in Pseudomonas putida KT2440

Annotation: conserved protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 965 to 1000 (36 residues), see Phobius details amino acids 1007 to 1031 (25 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_4623)

Predicted SEED Role

"Aconitase A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88E45 at UniProt or InterPro

Protein Sequence (1100 amino acids)

>PP_4623 conserved protein of unknown function (Pseudomonas putida KT2440)
MLGKLPCAIAFIIRSLCCFGNFGAQFMSFDFNFGTPNLGEGCPDPRSVKEQVKAMMAHAQ
ELQQLMATVAQLGSLIPEAHRQQFTEQKRLPLAVVESLVPQRQAVLGQWWEQQSRLSLKP
LTLASRLIQLMFAETRLKALTFKAWEAGIEALEQDGDANKHEVYLVAGDLRFRLPGVVAS
RHDLEQNPDAPADFLIYSLASGCWFDTERARAARELAPAFAEGSPLRWLLSSQERAALST
ESLTLDFVPLQVPLHRYFIRDLQAIQLEATRRSLRVKVDDARRLAQLDSAARLEPLVATL
QKRATRHVRAYRTSLLPEWRRFMQGEELQAYRQLEDDLQVKEKRCTERLAQWRDLRSFAK
KQVQQALGLDIDPEQVRLRVSHVDDPEQAMKHTLLDWALSGGYSGGQLKVEVLGERHRSL
LGSTSIQSVIEKLDLRVNYVKQIRTLYDDTLTMAALCEVLDARLALANQAARHQGFHPAA
FDLLHHARLGKMQANVISAGLVCLNGAQTPLKDLLCLVQDDQYLLYAPGAPGGDFHLFDS
LEKMALEIGSWTLWPVGSEYLLGQCSRAQHDSLKRHLRKVELLPTDWSMHSVTLAPIKSQ
QWPDVLKALAKRKILALIEDQQATTPSWFIKASRTEQQALVDIDQLLKLAQARYQSLMKV
PSFRTFAHRQVTEKINSYPGNRGGPINPDQVLITLEEDAIRTLTQTVIKGYPTYYNFSDF
ARITSAIGQDISHLSPALLGSYIRAADLGNKYIEEVKAQLLDRSRPEYERLRQCYRTLFA
LKIRRAVLSEKLQGSLSGRHAQWLESVSDSFSGTLIDAACNLYPLWMDDCPVQGAYLLKH
ARDRELEPLVYLPEIEQGPTLRTLSELARTWREHDLAGYCQDRVPLSSQSRLNALIEEQL
RAGDGIGVVLDAVARGRGVRPPIGETGRIGDPVQDLEKRIRRMINEAAEDSADAAERISS
VVVEWGIVLAGILTVPFPPAAMAVGLFCAARSFITGAIAWSDGDRSAALLSFAAGVAGTV
ASTGVLVRLFGAAQKYITVLSRAEVSQPTAFSRVIGRLCDDYGDLVSEVAPALYDGFSQE
LLWLVEEETLDVEAQCGLPA