Protein Info for PP_4588 in Pseudomonas putida KT2440

Annotation: putative oxidoreductase (nitroreductase family)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 197 PF00881: Nitroreductase" amino acids 18 to 163 (146 residues), 60.3 bits, see alignment E=2.9e-20

Best Hits

KEGG orthology group: None (inferred from 99% identity to ppg:PputGB1_4118)

Predicted SEED Role

"Nitroreductase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88E78 at UniProt or InterPro

Protein Sequence (197 amino acids)

>PP_4588 putative oxidoreductase (nitroreductase family) (Pseudomonas putida KT2440)
MSANPRIADYAINEQFINRWSPRAFTAEPISEETLLSFLEAARWAPSAYNSQPWRFLYAR
RDTPNWERYLSLLVPFNRNWAQQASALVLVISKTTFAAPGATEEKPALWHTFDTGSAWGH
LALQASISGWHTHGMAGFDQDLARQELKIPEGYVLHAMVAIGKLGDKASLDEALQAREVP
SPRKPLSELAAEGDFSL