Protein Info for PP_4409 in Pseudomonas putida KT2440

Annotation: Site-specific recombinase, phage integrase family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 476 PF00589: Phage_integrase" amino acids 232 to 425 (194 residues), 29.5 bits, see alignment E=3e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_4409)

Predicted SEED Role

"phage integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88EP5 at UniProt or InterPro

Protein Sequence (476 amino acids)

>PP_4409 Site-specific recombinase, phage integrase family (Pseudomonas putida KT2440)
MLTNFFYTKSIYLGKEHHIIRYMDEKNYGRELPPLSLHLRDLINQGYPDNSIKDSGLHNA
NFIDFFEEGLKHIEPSKSEVNTLYREYHSYLTVGSASNSTVVRKICEAKPSPMVSTASSK
KYHAQVQPFLKSLGNYFQKYKDYCENGLVIEKPETTLLIESLMKITPTTIRVREREKVAA
RQQAAPMTAATGNNQTRASYSSHIPYENNFCKPLDEDRYFPLDKVTDLITKASCYRNSCF
YALIAATNARNSEADQILWRDINFTSREVFLVNPHTRLNPGDAYRGLSEIERNKLEWKGR
GTPLTIMLEPYASLFFHYLELYILHEYQPSCGHNFVFHCKSGRPQFLCDYSTVVLHQFKN
AAKRALPNQQHLASKLGLHSLRHSNIFFLKNYLEHSQGQGLTDSELLLITGHADIRSLQK
YAKVDRELLLEKIAYGNSLRKNGNIKSSTEFQIQYLEERLAMFKEKLKQQNNQQRH