Protein Info for PP_4259 in Pseudomonas putida KT2440

Annotation: Iron-sulfur cluster-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 transmembrane" amino acids 42 to 62 (21 residues), see Phobius details amino acids 89 to 111 (23 residues), see Phobius details amino acids 164 to 182 (19 residues), see Phobius details amino acids 198 to 217 (20 residues), see Phobius details amino acids 338 to 358 (21 residues), see Phobius details TIGR02745: cytochrome c oxidase accessory protein CcoG" amino acids 39 to 468 (430 residues), 607.2 bits, see alignment E=9.5e-187 PF13746: Fer4_18" amino acids 217 to 322 (106 residues), 153.4 bits, see alignment E=9.5e-49 PF11614: FixG_C" amino acids 353 to 468 (116 residues), 104 bits, see alignment E=2.1e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_4259)

Predicted SEED Role

"Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation" in subsystem Biogenesis of cbb3-type cytochrome c oxidases or Terminal cytochrome C oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88F40 at UniProt or InterPro

Protein Sequence (471 amino acids)

>PP_4259 Iron-sulfur cluster-binding protein (Pseudomonas putida KT2440)
MSKQIPVHDVTPPANKGKDSVDLYASREKIYTRAFTGLFRRLRMVGGAVLFLLYFGTVWL
NWEGHQAVWWNLPERKFYIFGATIWPQDFILLSGILIVAAFGLFFITVFAGRVWCGYTCP
QSVWTWIFMWCEKITEGDRNQRMKLDKAPMSGNKFLRKFAKHSLWLLIGFVTGMTFVGYF
SPIRELAIEFFTGQADGWAYFWVGFFTLATYGNAGWLREQVCVYMCPYARFQSVMFDKDT
LIVSYDPRRGETRGPRKKDTDYKAQGLGDCIDCTMCVQVCPTGIDIRDGLQIECIGCAAC
IDACDSIMDKMNYPKGLISYTTEHNLSGQKTHMLRPRLIGYAVVLLVMMIGLATAFATRS
LVGFDVSKDRVLYRENAQGRIENVYSLKVMNKDQRDHLYVLDAAGLPDLKLEGQREIRVA
AGDIVSLPVQLSVAPEKLPSTTNEITFILKSADDSDAQVEAKSRFIGPQIR