Protein Info for PP_4243 in Pseudomonas putida KT2440

Annotation: non-ribosomal peptide synthase (subunit of ferribactin synthase)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4000 4317 transmembrane" amino acids 77 to 95 (19 residues), see Phobius details amino acids 1963 to 1977 (15 residues), see Phobius details PF00501: AMP-binding" amino acids 16 to 412 (397 residues), 237.2 bits, see alignment E=5.5e-74 amino acids 1132 to 1478 (347 residues), 306.3 bits, see alignment E=5.7e-95 amino acids 2183 to 2536 (354 residues), 259.7 bits, see alignment E=8e-81 amino acids 3709 to 4063 (355 residues), 222.3 bits, see alignment E=1.9e-69 PF00550: PP-binding" amino acids 588 to 650 (63 residues), 45.9 bits, see alignment (E = 1.1e-15) amino acids 1631 to 1694 (64 residues), 48.6 bits, see alignment (E = 1.5e-16) amino acids 2702 to 2763 (62 residues), 55.7 bits, see alignment (E = 9.7e-19) amino acids 4228 to 4291 (64 residues), 62.5 bits, see alignment (E = 7.3e-21) PF00668: Condensation" amino acids 672 to 1113 (442 residues), 361 bits, see alignment E=1.9e-111 amino acids 1717 to 2163 (447 residues), 356.6 bits, see alignment E=4e-110 amino acids 2779 to 3217 (439 residues), 257.8 bits, see alignment E=3.7e-80 amino acids 3240 to 3688 (449 residues), 299.5 bits, see alignment E=8.4e-93 TIGR01733: amino acid adenylation domain" amino acids 1153 to 1552 (400 residues), 420.6 bits, see alignment E=1.8e-129 amino acids 2204 to 2610 (407 residues), 413.9 bits, see alignment E=2e-127 amino acids 3731 to 4138 (408 residues), 389.7 bits, see alignment E=4.4e-120 PF13193: AMP-binding_C" amino acids 2594 to 2674 (81 residues), 45.4 bits, see alignment (E = 2.7e-15) amino acids 4122 to 4199 (78 residues), 34 bits, see alignment (E = 9.4e-12) TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 3081 to 3232 (152 residues), 151.4 bits, see alignment (E = 5.4e-48)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88F56 at UniProt or InterPro

Protein Sequence (4317 amino acids)

>PP_4243 non-ribosomal peptide synthase (subunit of ferribactin synthase) (Pseudomonas putida KT2440)
MTDAFELPLSLVQALAQRAAQTPERIALRFLADTPGEQAVLSYRDLDQRARTIAAALQGR
ASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYPPESARQQHQERLLSIIDDAEPRLL
LTVAALRDSLQGLEALAADNAPQLLAVDGLDPALAANWREPVLKGDDIAFLQYTSGSTAL
PKGVQVSHGNLVANEQLIRQGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVL
MSPRYFLARPLRWLQAISEYGGTISGGPDFAYRLCSERVSEASLAGLDLSRWRVAYSGSE
PIRQDSLATFADKFQACGFDPQSFFASYGLAEATLFVSGSRRGQGIAALELDAKAFAANR
AEPGTGSVLMSCGFPQPGHAVRIVEPQQLQVLGDNQVGEIWAGGPSIARGYWRNPEASAR
TFVEMDGQTWLRTGDLGFIREGEVFVTGRLKDMLIVRGQNLYPQDLEKALEREVQVLRKG
RVAVFAVEHQGEEGIGVAVEISRNVQKALKPQDLIKTLRQVVADACRQAPAVVLLLNPGA
LPKTSSGKLQRSACRLRMDDGSLDCYARFPEVSAAGIRATAGDELQARIAAVWRDILKVE
AVAADDHFLLLGGNSIAATQATARLADELGIDLSLRTLFEAPVLADYSKAVAQIIADGAA
ATTAITTLERAQALPQSLAQNRLWLLWQLEPQSAAYNIPAGLHLRGELDVNALHVAFQAL
VARHESLRTVFSEENGQALQRILPQQPLSLHRLDLEGHSPEQVAAQRETEARQPFDLTQG
PLLRVTLVRLGDEEHQLWVTLHHIVADGWSLNILLEEFAKLYAARCQGLEANLAPLPLGY
ADYGSWQRQWLADGEAERQLQYWKAHLGGELPALDLCTDHPRASQREHSAARFSLKVPVR
LGEALKGLAHQQQASLFMVLLAGWQALLQRYSGQADIRVGVPNANRPRLETQGMVGFFIN
TQVLRARFDGRHSFTQLLTQVRQATLQAQANQDLPFEQLVEALPDAREQGLFQVMFNHQQ
RDLSALRRLPGLLAEELAWHSREAKFDLQLHSEEDHLGRLSLAFDYAAELFEASTVERLA
HHLLALLEQVCAAPQQALGDVQLLDEPGRAQLLGWGQAPAAAAQHLLVEQLNEQVRLTPQ
RTALVWDGGSLDYAGLHQQANRLAHYLRDKGVGPDTCVAIAIERSPQLLVGLLAILKAGG
AYVPLDVDYPAERLAYMLADCDARLLLSHSSLLGKLPQVDGVSAIALDQLHLDSWPSHAP
GLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQTTYALNDSDVLMQKAPISFD
VSVWECFWPLVTGCKLVLAGPGEHRDPQRIAALVQAYGVTTLHFVPPLLQVFVQEPQASA
CSSLRWVFSGGEALSATLRDRVLQVLPQVQLHNRYGPTETAINVTHWHCQVVDGERSPIG
RPLGNVLCRVLDDELELSAPGVPGELYLGGAGLARGYLGRPGLTAERFVPQADGNGQRLY
RSGDRARWQVQLEALEYLGRLDQQVKVRGFRVEPEEVQACLLAQAGVEQALVLIHKDAIG
AQLVGYYSGSAQPAEVLAVLAEQLPAYMVPAQLIPLAQMPLGPSGKVDRKALPAPVWQQR
EHVEPRTELQQQVAAIWRDVLNLPRIGLQDDFFALGGHSLLATQIVSRTRQACDVELPLK
ALFEASELGAFCAEIARLRAAGERNLQGAITRVDRRQAVPLSYSQQRMWFLWQMEPDSPA
YNVGGMARLRGTLHVDAFERALQALIVRHETLRTTFPSIDGVPYQCVAEDSGLHLDWQDF
SALSDDACQQRLQQLADDQAHQPFDLERGPLLRACLVKANEREHFFVLTLHHIVTEGWAM
DIFARELGELYEAFVDDRESPLAPLPVQYLDYSVWQRQWLESGEGARQLAYWKHRLGDEH
PVLALPADRPRPAVQSHRGELYRFELDPALVARVHAFNSQRGLTLFMTMTATLAALLHRY
SGQRDLRIGAPVANRIRPESEGLIGAFLNTQVLRCELDGQMTASALLEQVRQAAIEGQSH
QDLPFDQLVEALQPPRSSAYNPLFQVMCNVQRWAFQQSRTLAGMQVDYLVNDASATKFDL
YLEVTDLDGRLGCCLTYSRDLFDAPRIARMAEHWQQLLVGLLDNPQHRLCELPMLSSAEQ
QVLTGQLQGEHDFDLGQTLHGLFAAQAARTPQAGALTFAGQHLTYAELDQQANRLARALR
ERGVGPQVRVGLALERSLEMVVGLLAILKADGAYVPLDPEYPLDRLRYMIEDSRIGLLLS
QRALLHTLGELPEGVASWSLEDDAASLAAYSDAPLDNLSLPQHQAYLIYTSGSTGKPKGV
VVSHGEFAMHCQAVIAAFGMRSDDCELHFYSINFDAASERLWVPLLCGARVVLRAQGQWG
AEDICQLVREQQVSILGFTPSYGSQLAQYLGGRGEQLPVRLVITGGEALTGEHLQRIRQA
FAPQQCFNAYGPTETVVMPLACLAPEALPADLGSVPIGRVIGSRTAYILDEDLALLPQGG
IGELYVGGAGLAQGYHDRPGLTAERFVADPFSAEGGRLYRTGDLVRLGTDGLVEYVGRAD
QQVKIRGFRIELGEIESRLLAHEDVDEAVVLALDLPGGKQLVGYLVCRQATAGNDVQQLL
REAVKADARQHLPDYMVPAHLVLLDSLPLMGNGKLDRHALPLPDLEQARQQYQAPGNEVE
AQLAQIWRDVLNVARVGVQDNFFELGGDSILSIQVVSRARQAGLQFTPRDLFQHQTIQTL
ATVVQLSEAASTVEQGLRQGQAGLTPIQHWFFDSDVPQPQHWNQTVLLEVRQPLVEATLE
QALAALVQHHDSLRLRFSDAQGRWQAQYVQPGAEQLLWSATVADFNDCQALYTDVQRSLD
LQQGPLLRALLVRDGQGTQRLLLAIHHLVVDGVSWRVLLEDLQALYRGQPLPAKTHAVGD
WAARLASYAGSDSLRDELAWWQGQLGGVRRELPCDHPQGSNLHRHAQTLAIGLDVEQTRQ
LLQLAPAAYHTQVNDLLLTALARALCRWSGDEEVLVQLEGHGRDGLFEDMDLTRSVGWFT
NAYPLSLRPLPGEDDAARAGSIKRIKEQLRHVPHKGLGYGVLRYLADAAGREQMAALPQA
RITFNYLGQFDQQFDSAALFQPLEASAGLAHDLDAPLPNWLSVDGQVYGGALQLRWTFSA
ERYDQQTIARLAEGYRQELLALVAHCLADGNGSFTPSDFPLAHLTQEQIDALPVPAAQIE
DVYPLTPMQEGMLLHTLLEPGTGLYYMQDRYRINSALDPERFAQAWQAVVARHEALRASF
SWNSGEAMLQIIHKPGNLAVDYQDWRGLADDAQEQRLQALHKQEREAGFALLSEAPFHLR
LVRVAEERYWFMMSNHHILIDAWCRSLLMNDFFEVYQALGEGRQAQLPVPPRYRDYIGWL
QRQGLDDARAWWQANLAGFERATAIPSDRPLRHDHAGSGMVVGDCYTRLEMNDGVRLREL
AQAHQLTVNTFAQAAWALVLSRYSGDRDVAFGVTVAGRPVSMPQMQRTVGLFINSVALRV
QLPAASERCSVRQWLQGLLQSNMELREYEYLPLVAIQACSELPKGQPLFDSLFVFENAPV
ETAVLNHAQHLNASSDSGRTHTNFPLTAVCYPGDDLGLHLSFDQRYFDYPTVERLLAEFK
RLLLALVQGFEGEVSELPLLSAQEQGFLLEDCNRTERVYPLEQSYIAQFEAQVVAHPQRT
VARCLEASYDYAGLNLAANRLGHALVAAGVCVDQPVALLAERGLPLLGMIVGSFKAGAGY
LPLDPGLPAARLQSIIQLSRTPVLVCSAACAEQGRQLLGELEASLRPQLLVWEDVQANPI
ASHNPGIHSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEQDVIAQTA
SQSFDISVWQFLAAPLFGAKVEIVPNVIAHDPQGLLAHVQATGITVLESVPSLIQGMLAS
DHQALDGLRWMLPTGEVMPPELAAQWLQRYPQIGLVNAYGPAECSDDVAFFRVDAASTQG
SYLPIGTPTDNNRLYLFGEDQALVPLGAVGELCVAGAGVGRGYVGDPVRTALAFIPHPYG
APGERLYRTGDLARQRLDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEIRDAAVAV
QEGVNGKHLVGYLVAHQGVSADAALLEQVKQRLRAELPEYMVPLHWGWFDSLPHNANGKL
DRKALPAIDIGGQYSQAYLAPRNELEDVLAGIWADVLKAERVGVHDNFFELGGHSLLATQ
IASRVQKQLQLNVPLRAMFECSTVEALAEYVQGLQGSALDDDKVDRLSDLMAELEGL