Protein Info for PP_4221 in Pseudomonas putida KT2440

Annotation: non-ribosomal peptide synthetase (subunit of ferribactin synthase)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2174 transmembrane" amino acids 176 to 195 (20 residues), see Phobius details amino acids 201 to 218 (18 residues), see Phobius details amino acids 293 to 311 (19 residues), see Phobius details amino acids 1337 to 1355 (19 residues), see Phobius details amino acids 1375 to 1392 (18 residues), see Phobius details PF00668: Condensation" amino acids 51 to 476 (426 residues), 349.5 bits, see alignment E=5.6e-108 amino acids 1096 to 1538 (443 residues), 347.7 bits, see alignment E=1.9e-107 PF00501: AMP-binding" amino acids 512 to 848 (337 residues), 237.4 bits, see alignment E=4.9e-74 amino acids 1561 to 1917 (357 residues), 248.5 bits, see alignment E=2.1e-77 TIGR01733: amino acid adenylation domain" amino acids 530 to 922 (393 residues), 371.1 bits, see alignment E=3.1e-115 amino acids 1582 to 1991 (410 residues), 401 bits, see alignment E=2.8e-124 PF13193: AMP-binding_C" amino acids 906 to 986 (81 residues), 28.5 bits, see alignment (E = 4.8e-10) amino acids 1976 to 2058 (83 residues), 30.4 bits, see alignment (E = 1.3e-10) PF00550: PP-binding" amino acids 1015 to 1076 (62 residues), 56.5 bits, see alignment (E = 5.3e-19) amino acids 2086 to 2149 (64 residues), 57.3 bits, see alignment (E = 3.1e-19)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88F77 at UniProt or InterPro

Protein Sequence (2174 amino acids)

>PP_4221 non-ribosomal peptide synthetase (subunit of ferribactin synthase) (Pseudomonas putida KT2440)
MNAQDSLKLARRFIELPAAKRRLFLDAMRGEGVDFALLPIAPGVEVAARDALSYAQQRMW
FAWRLDAKSAAYNLPMAVKLKGPIAPEALQQALDTLVARHESLRTLFPEVDDQPRQRVQA
QASIRGEMLDLSHLQGEAQAQQVEAACAAESAAPFDLAAGPLMRVRLLRTSATEHLLLIT
LHHIIADGWSLGILIDELVRLYDAAVAGQASALAPLAIQYRDFALWQRSWLEAGEQARQL
EYWLDHLGNDHPVLQLPSDHLRPALPSYRGERLELQIDAALAQRLQALARRHNVTLFVVL
LAAFKTLLYRYSGQSRVRVGVPIANRNRSEVEGLIGCFINTQVLQTDIDPTQGGAHLLSQ
VKACAAQAQSHQDVPFDQLVEALGLERTGGVSPLFQVLFNHQSMVTDVATVRTASGLELE
KLELRKSTARFDLTLDTVEVAGQLRAAFTFALDLFERDTVEAMGRDWLSLLAALSRDDVA
ALGDWPLAGAPVAAPQVLPYAGPLLHQRVTAFAKAQPQRIAVVSADGSLSYGELDARADQ
LCAQLQAHGVVADQPVGLIAERSVNLLVGLLAILKAGGAYVPLEPGQPQQRMAFMLRDAQ
IKVLLRAEDEPGPAIGGVQCLALNAAGGEAGVPVAVHSGNLAYVIYTSGTTGMPKGVAVS
HGALANYLEGLSERIALGDLEHFAMVSTPAADLGHTMLFGALWAGKTVHLLQREAVLDAD
GFAAYLSANHVDALKIVPSHLGALLDACADASVLPQRCLVLGGEACPPALLARIGTLRPG
LKVLNHYGPTETTVGVLTAELAAGEVTHLGSPLRNSRVQVLDATLQAVPGMAKGELCIAG
AGLARGYLARPGLTAERFVPDAHGEPGARLYRTGDVVQRDRQGRLLYLGRVDHQLKIRGY
RVEPGEIEACLQGLPDVDKAVVRATGQDGSLQLLAYLVAPRLLARERDAEAAQEAVQQAL
KLHVQAHMVPARVLFLDSLPLTANGKVDLARLPLPDQQHPVASHTPAQTPLQIDLANLWQ
EVLGCPQVGLDDNFFALGGHSLMATQIVSRARRQLGLDIPLRLLFDTADLRSFSHRVSQL
GEVADAPIQVLDRQAWLPVSHAQYRQWLFWKIHPHSSAYHTPMAVRITGALDREALAQAF
SALVSRHESLRTCFEEQQGVPGLRVHANLAVTLEQQQAQAFDPAQLLQQLQADIQQPFDL
ANGPLIRMKLYQRGEQEHLLLVTLHHIVSDGWSMGVMVRECIAVYNHHAAGAAQPDFAPL
PVQYADYASWQRERLSEGQMQAQLGYWQAHLEDDFAVLQLPADRPRPELQSYRGGRLDVR
LPAQLTADLRRLAVRCNATLFHVFLASFGLLLARYSGNEKINIGVPMTNRNRLELEGLIG
FFVNTVVLRLSVDYSVSFEQLLAHTKEISLQAQANKDLPFDALVEALQPERGMGYNPLFQ
VMYNHLRDLGEQVTGQSLNGLQVEEVDLDEGTAQFDLSLDTVERSDGVLATFTYAVDLFD
PSRIQRMATHWLNLLQALCAQPHVCVDRLALATADERRLVERDWCQGPAEQLSDTAVARQ
FEAQVLRAPDAVAVIHEGQAWSYAELNRRANRLAHRLQALGAGPEVLIGVALERGLGMVA
GLLAILKVGAAYVPLDPDYPAERLAYMIEDSGLALLLTQASLSEQLAVPACVTQVCLDAL
LEDGDASNPQVAIDPATLAYVMYTSGSTGRPKGVAITQGALSQHAQVSLGFFNLKPSDRI
LQFATFNFDGFVEQLYPALICGASVVVRGPELWGSERFYRELISNDISVVDVTTAYWFML
AKDFAEHGPRDYGRLHQFHAGGEAMPPEGLLAWQAAGLGHVTLLNTYGPTEATVTVTAHD
CAPYLGATAQALPPVMPIGRVLAGRSIHLLDNSGGAVLNGAVGELMIGGELLARGYHQRP
GLTAERFIPDPFGAPGSRLYRSGDLARYLADGQIEYAGRIDHQVKIRGFRIELGEVGARL
LEHASVRDALVIDVDGPLGKQLVGYLVPAVADVAQASVQTQQELLAQLRTDLRSSLPDYM
VPAHLIWLPELPLSPNGKLDRKALPQPDLAQLQVRYVPPYSDTECKVAAIWADVLRIEQV
GLDDNFFELGGHSLLAAQALSRINSQLGIDMPIRLIFETPVLRAFAQALEGAGQALTEEG
LAGIEQLMNELTEA