Protein Info for PP_4220 in Pseudomonas putida KT2440

Annotation: non-ribosomal peptide synthetase (subunit of ferribactin synthase)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2628 transmembrane" amino acids 284 to 302 (19 residues), see Phobius details amino acids 687 to 700 (14 residues), see Phobius details PF00668: Condensation" amino acids 50 to 477 (428 residues), 345.2 bits, see alignment E=1.1e-106 amino acids 1090 to 1529 (440 residues), 257.3 bits, see alignment E=5.3e-80 amino acids 1551 to 1981 (431 residues), 288 bits, see alignment E=2.5e-89 PF00501: AMP-binding" amino acids 504 to 851 (348 residues), 255.5 bits, see alignment E=1.6e-79 amino acids 2013 to 2366 (354 residues), 237 bits, see alignment E=6.6e-74 TIGR01733: amino acid adenylation domain" amino acids 525 to 923 (399 residues), 381 bits, see alignment E=6.2e-118 amino acids 2034 to 2442 (409 residues), 381 bits, see alignment E=6.4e-118 PF00550: PP-binding" amino acids 1007 to 1068 (62 residues), 54.6 bits, see alignment (E = 2.1e-18) amino acids 2530 to 2594 (65 residues), 62.4 bits, see alignment (E = 7.6e-21) TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 1387 to 1543 (157 residues), 170.6 bits, see alignment 2.2e-54 PF13193: AMP-binding_C" amino acids 2426 to 2503 (78 residues), 37.1 bits, see alignment (E = 1e-12)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88F78 at UniProt or InterPro

Protein Sequence (2628 amino acids)

>PP_4220 non-ribosomal peptide synthetase (subunit of ferribactin synthase) (Pseudomonas putida KT2440)
MDKTTAERIARRFVAMPLEQRRQVVEKMSAGGQSFRLLPIVASRHDVARIPLSYAQQRLM
FLWQLEPTSAFYNVPMAVTLRGEIDVGAMARALELLVQRHETLRTRLVMDEGECYQQVLE
QSPVVLECVEVQAHDLDGAVRDELRRPFDLFADPLLRVKLLRVGATEHVLTVCMHHIISD
GWSSELMVQTFVSFYDALLAGQAPNPEALPIQYADYAIWQRAWLEAGEGERQLRYWQTQL
GDEQPLLDLPLDYPRPAQPSYQGAVVRADLPPALSSALRSLAQANGQTLFMVLLGALAVV
LSRHSGQHDIRIGVPNAGRNRKDLEGLIGFFINTQVMRVQVDEQATFSELFAQVRQVVAE
AQSHQELPFEQLVDALAPERNLSHNPLFQFKLNQNVAGEAAGGEQRKTLSGLQVEEYPLS
GADARFDLAFDFTDGADGIQAYFTYATDLFKASTVERLVTALHTLLQDMVAAPASRLLDC
VGDADAVLHGEPASFPCTDFLSLFRRALANAGERPALRAGAEQLSYAQLDQRSNQLAHHL
LAMGVKPGAVVALCQERSIEWVTGLLAVLKVGAAFLPLDSAQPVERLAQLVTDSQAVLMV
HDPKLALGGFAACPVLPFDAAAWRQCPTTPLAIEVCAAQPAYVIYTSGSTGQPKGVVVAH
GMLANYVQGILQRLQLPADASMAMVSTVAADLGHTVLFGALASGRLLHLMSREHAFDPDV
FASYMAEHQVDVLKIVPSHLQALLQASDAASVLPRKLLIVGGEASPWSLVEKVRQLKPLC
RMVNHYGPTETTVGILSHEVGASEPDLRCVPVGQPLANSHVYLLDSGLNPVGERVAGELY
LGGQGVAQGYLGRPAMTAERFVPDPHGDGTRVYRTGDRARLAQGQVEFLGRADDQVKIRG
YRVEPGEVGEVLRGMEGVHEAVVLPLALESDPARLQLVGYCVTAPDVAASALLTQLQAQL
PDYMVPAHLVLLEQLPLTANGKLDKRALPKPEVAGKAYVAPAGEVEEKLAAIWADVLKLE
QVGSTDNFFELGGDSILSLQIIARAKRQGIKLTPKQLFEKQTVAALAQVARVIQDKPQAA
VVQPEADGPLPLLPIQARFFDTAIAQRHHWNQSVLLKPLQTLQAQALDKALLALVDEHEA
LRLAFTEHAGKWQAAPRTTPVQALLQVVTLDSLAALETAANEVQASLDLARGELFRATLF
ELADGQQRLLLAVHHLVVDGVSWRILFEDLQTAYQQASLGQAVSLPSRSAPLRQWARQLD
DYARSENLQAERDYWLQAAQQPAGELPCDNPQGECNLRQAAHATTRLDKALTHKLLKVAP
AAYRTQVNDLLLTALARALCDWSGQPSVSILLEGHGREDLFDDLDLSRTVGWFTSLFPVQ
LTPLPSVAASIKHIKQQLAEVPAKGIGYGVLRYLGEAAFAQRLAALPQPRVTFNYLGQFD
GSFSEQGGALFVPANESAGRSQDEDSPLGNWLSVNGQVYDGELRLDWTYSRDMFHEATIE
QLASRYQQALREVIEHCVEPEAQGITPSDFPLAGLSQQQLDRLPVAARDIEDIYPLSPMQ
EGLLMHTLLEPGSGIYLMQYCYRVDHAIDVGAFSEAWKAVIARHDVLRTSFCWDLGERMV
QIVHRRTEPALRLLDWRHLAEDQYEQALQAELEAELRQGFDMAKEVPFRLRLILLDADQF
GFVFSNHHVLLDAWCRMGVVDEFFKVYQSLTTGVPVQLPTPPRYRDFIALLQRWDREASR
DFWRNELQGFERPTALPFDRSASAEHNHAAVADELVYLTREQSAQVAQRAQAAQLTVNTL
VQGAWALLLQRYSGDRDVVFGVTVAGRPVEFPEMQATVGLFINSIPLRVRLPGAEAGVTA
KAWLKSLLDHNLNLREHEHLPLVDIQACSEVGSGQALFDSLFVFENAPVESSVGAQASTM
KVKAGSSRTHTNYPLTVVVYPGEVLGLHLSYDQRLFDSATISVLLADFRALLLALSEQLD
ADFHAVAAALPGSAPEVPTALPEAYEQGYARLFDATVQRAGQLPAAACQGREWSYAELDQ
RARRLAGVLQGNGVSVDHLVAVLGERDLSLLGMVVGVFQAGAGYLSLDPSLPVARLADVL
RLSQARVLVCDEHCLGLAQAMLEGFQAPPTLLVWEQVQAHAAPAQMLHLPINAAKLLAYV
IFTSGSTGVPKGVMVEQAGMLNNQLSKLPYLGLRGSDVIAQTASQSFDISVWQLLTAALC
GCRVEIFPDAVAQDPQALLQQVEATGVTILECVPAMIQAMLELPARQLPRLRYLLTTGEA
MSPALARRWRERYPQVELVNAYGPAECSDDVALYRVRDDASSVHLPIGAATEHNRLHVLN
DLLEPMPARATGELHVAGVGVGRGYLGDPVRTALSFVPDPFASRPGERLYRSGDLAHVCA
DGQTLEYVGRADFQVKIRGYRIELGEIESRLLAHEGVHSAVVVDAQVAGGKQLVAYWVAR
DASVAAAEMRSVLADYLRASLPGYMVPALWVRLDSLPLTANGKLDRKALPAPDPSTAQQR
YQAPETSLQQQLAQVWSEVLGVERISLGDDFFELGGHSLLVVQVVARVGRELGIEVSLRS
LFEHPTLGAFSEAVAVLQGQGASIQDELAKSLAALKRLTAEEIDELTQ