Protein Info for PP_3865 in Pseudomonas putida KT2440

Annotation: putative Phage tail protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 651 transmembrane" amino acids 350 to 369 (20 residues), see Phobius details amino acids 389 to 412 (24 residues), see Phobius details amino acids 417 to 442 (26 residues), see Phobius details amino acids 465 to 480 (16 residues), see Phobius details TIGR01760: phage tail tape measure protein, TP901 family, core region" amino acids 52 to 403 (352 residues), 223.7 bits, see alignment E=1.7e-70 PF10145: PhageMin_Tail" amino acids 92 to 294 (203 residues), 145.8 bits, see alignment E=7.9e-47

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_3865)

Predicted SEED Role

"Phage tail length tape-measure protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88G60 at UniProt or InterPro

Protein Sequence (651 amino acids)

>PP_3865 putative Phage tail protein (Pseudomonas putida KT2440)
MADKFQLKALITGVDKLSPTLAGVRKNISTFRKNLESTGLGKIGWSDIITGGAMAAPFIA
GARAAIDFESQMADVRKVVNFDTPDQFKKMGDDIGRMSERLPMAATDIAKIVAAGGQSGI
ARDELLGFAEAAVKMGIAFDQTADESGDMMTTWRTAFRMNQAEVVSLADRINYLGNTGPA
NTKKISAIVTEVGALGEVAGMSSAQVAAIGATMAGVGVKQDVAATGIKNFMLAMTKGTAA
TKAQADAYKALRLDAKTVAENMQKDAQGTTLDLLKRISLIDAAKRPAILSELFGTESITA
ITPLLTNLELLRSNLDKVNDAKKFAGSMEQEYASRAATTRNNMTLLRGSIDRVAVAIGNA
LLPGINAVLEQLRPWISHMAQMISDNPQLVRGIVIAGAAFTALRAAVFAATVATRVLGVA
FAATPIGLIAAGIAAAAGLIVANWEKVGPFFSALWELIKAYTTPFMEFIKSVFGWAPLAL
IIKNWEPIVGWFKGLWDRVSPYLEPLLKLFGGGDGESLTVRVQRLADEQKARNSVAGGSG
ALVQANAVQVAQGVQAAREQAFGVSPEALLRAATPLPAPGGLLRASGQLPEPGALLRQSA
QVGGKQQLEGEVRVAFDNSPPGLRVESVKTSQPGVTITPNVGRRTMGGTYE