Protein Info for PP_3827 in Pseudomonas putida KT2440

Annotation: 2-nitropropane dioxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

KEGG orthology group: K00459, nitronate monooxygenase [EC: 1.13.12.16] (inferred from 100% identity to ppu:PP_3827)

Predicted SEED Role

"Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9)" in subsystem Fatty Acid Biosynthesis FASII (EC 1.3.1.9)

MetaCyc Pathways

superpathway of fatty acids biosynthesis (E. coli) (51/53 steps found)
superpathway of fatty acid biosynthesis II (plant) (38/43 steps found)
palmitate biosynthesis II (type II fatty acid synthase) (29/31 steps found)
superpathway of unsaturated fatty acids biosynthesis (E. coli) (20/20 steps found)
anteiso-branched-chain fatty acid biosynthesis (30/34 steps found)
even iso-branched-chain fatty acid biosynthesis (30/34 steps found)
odd iso-branched-chain fatty acid biosynthesis (30/34 steps found)
superpathway of fatty acid biosynthesis I (E. coli) (15/16 steps found)
oleate biosynthesis IV (anaerobic) (13/14 steps found)
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) (9/9 steps found)
biotin biosynthesis I (13/15 steps found)
(5Z)-dodecenoate biosynthesis I (6/6 steps found)
cis-vaccenate biosynthesis (5/5 steps found)
fatty acid elongation -- saturated (5/5 steps found)
gondoate biosynthesis (anaerobic) (4/4 steps found)
8-amino-7-oxononanoate biosynthesis I (9/11 steps found)
(5Z)-dodecenoate biosynthesis II (5/6 steps found)
stearate biosynthesis II (bacteria and plants) (5/6 steps found)
alkylnitronates degradation (2/2 steps found)
8-amino-7-oxononanoate biosynthesis IV (4/5 steps found)
streptorubin B biosynthesis (20/34 steps found)
mycolate biosynthesis (20/205 steps found)
superpathway of mycolate biosynthesis (21/239 steps found)

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.13.12.16 or 1.3.1.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88G98 at UniProt or InterPro

Protein Sequence (361 amino acids)

>PP_3827 2-nitropropane dioxygenase (Pseudomonas putida KT2440)
MSHWPDRRILNLLGIELPILQAPMAGATGSAMAIAVGQAGGLGALPCAMLSGEQVRAEIA
AFRAGCPGRPLNLNFFCHQPPAPDAERDARWKQALEPYYSEVGADFTAPTPVSNRAPFDE
QSCLLVEALRPEVVSFHFGLPQAELLQRVKASGAKVLSSATTVEEAAWLERNGCDAIIAM
GYEAGGHRGMFLSDDITSQIGTFALVPQVADAVGVPVIAAGGIGDHRGLLAALALGASAV
QIGTAYLFCPEAKVSPAHRQALDSAPASDTALTNLFTGRPARGINNRLMRELGPMSELAP
RFPLAGGALMPLRAITDPQGKSDFSNLWSGQALRLGRHMPAGELTREIAGKALAVIGHQA
F