Protein Info for PP_3805 in Pseudomonas putida KT2440

Annotation: lipoprotein required for swarming

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 PF07759: DUF1615" amino acids 36 to 350 (315 residues), 514.9 bits, see alignment E=4.2e-159

Best Hits

Swiss-Prot: 62% identical to YAIW_ECOLI: Uncharacterized protein YaiW (yaiW) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to ppu:PP_3805)

Predicted SEED Role

"Putative outer membrane lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88GB9 at UniProt or InterPro

Protein Sequence (350 amino acids)

>PP_3805 lipoprotein required for swarming (Pseudomonas putida KT2440)
MALVLLQGCAGRREEAPEADPAKVRAQLLRLLPAQVKDREGWAKDIQAAFEAQRIAPSKS
NLCAVLAVTEQESTFTADPQVPNLGRIARQEIDRRAARLHIPKLLVDGALKTPSGNGKSY
QQRLQTVRSEKQLSELYDEVVARLPLGKTLLGGLNPVHTGGPMQVSIDFAEKHARDYPYS
HEGTIRQEVFSRRGGMYFGIAHLLGYPANYERQLYRFADFNAGWYASRNAAFQAALSKVT
GVKLALDGDLVAPGAIMPGTTELAARKLGVKLGLRNPQIRSQLEEADSLAFEDSKLYSGV
FALADAKAGKPVPRAVLPGIELKSPKITRKLTTAWFAGRVDERYQRCMKR