Protein Info for PP_3776 in Pseudomonas putida KT2440

Annotation: putative permease (RarD protein)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 33 to 57 (25 residues), see Phobius details amino acids 76 to 98 (23 residues), see Phobius details amino acids 104 to 122 (19 residues), see Phobius details amino acids 129 to 146 (18 residues), see Phobius details amino acids 152 to 169 (18 residues), see Phobius details amino acids 181 to 201 (21 residues), see Phobius details amino acids 206 to 209 (4 residues), see Phobius details amino acids 214 to 233 (20 residues), see Phobius details amino acids 242 to 263 (22 residues), see Phobius details amino acids 270 to 290 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_3776)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88GE8 at UniProt or InterPro

Protein Sequence (304 amino acids)

>PP_3776 putative permease (RarD protein) (Pseudomonas putida KT2440)
MAGKTFDAAAGLSAALASNCLLGLSSLYWKALAALPALALLGCRVLMSLLCVTLLLAARK
ELVPLLCVLKRRDIALHGAAAVLVAGNWGTFIWASIHGHVLESGLGYLIAPVLGISLGLL
LYQERLSVPRGLSLTMVIGSVVYLLFEKGGLDSRVFLVIGVTWGTYTWLKKLARLPPWSG
LFLESLVLGVLLMPLILWVSTPVAGIAALGSADTALLLLCGAVSLLPLALFSFAARRLPL
SVMGLMQFVLPLTQFFVALMFYGQIPSHGAMLAFALIALAMLLVILEPLLTTIFFKAKGV
VEDA