Protein Info for PP_3756 in Pseudomonas putida KT2440

Annotation: TetR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 193 PF00440: TetR_N" amino acids 18 to 59 (42 residues), 60.8 bits, see alignment 4.3e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_3756)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88GG8 at UniProt or InterPro

Protein Sequence (193 amino acids)

>PP_3756 TetR family transcriptional regulator (Pseudomonas putida KT2440)
MPPVNAAMRCANFEERRDRAMALFAEKGFGQVSMRELAAHVGLTAGSLYHHFPSKQDLLY
DLIEELYEELQATLDQARRAMARGASALSCLIAAHWQLHAERPLQFRLAERDLCCLSEAQ
QAHLASLRKRYEAGLLRLIAPQAKLPGQALDATAHVLATLLNQLPGLLKAMPEEQGLELM
ENLLVGGIERTLR