Protein Info for PP_3541 in Pseudomonas putida KT2440

Annotation: Transporter, MgtC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 172 transmembrane" amino acids 24 to 41 (18 residues), see Phobius details amino acids 53 to 71 (19 residues), see Phobius details amino acids 77 to 98 (22 residues), see Phobius details amino acids 110 to 129 (20 residues), see Phobius details amino acids 135 to 153 (19 residues), see Phobius details PF02308: MgtC" amino acids 28 to 151 (124 residues), 127.8 bits, see alignment E=1.5e-41

Best Hits

KEGG orthology group: K07507, putative Mg2+ transporter-C (MgtC) family protein (inferred from 98% identity to ppf:Pput_2233)

Predicted SEED Role

"Mg(2+) transport ATPase protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88H24 at UniProt or InterPro

Protein Sequence (172 amino acids)

>PP_3541 Transporter, MgtC family (Pseudomonas putida KT2440)
MDVIWQAIQAEFADVTDEREVTQILVRLLMAAVLGAVLGFEREHKGKSAGVRTHMLVSLG
AALFMLAPSMAGADEQALSRVIQGIVAGIGFLGAGTILKGNGQNTSHVKGLTTAAGLWMT
AAIGTAAGMGREATALISTVLALLVLGTMPLLVEKVEGQDEEKQKEEEGRKH