Protein Info for PP_3459 in Pseudomonas putida KT2440

Annotation: quinohemoprotein amine dehydrogenase, beta subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 379 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details TIGR03907: quinohemoprotein amine dehydrogenase, beta subunit" amino acids 41 to 379 (339 residues), 554.5 bits, see alignment E=4.2e-171

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_3459)

MetaCyc: 96% identical to quinohaemoprotein amine dehydrogenase beta subunit (Pseudomonas putida U)
1.4.98.-

Predicted SEED Role

"Quinohemoprotein amine dehydrogenase 40 kDa subunit"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88HA1 at UniProt or InterPro

Protein Sequence (379 amino acids)

>PP_3459 quinohemoprotein amine dehydrogenase, beta subunit (Pseudomonas putida KT2440)
MTRGNRMKAGRCAPLALTIAAMACAGQAQADDTGPALKAGHEYMIVTNYPNNLHVVDVAS
DTVYKSCRMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVAGEV
GRSIYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLQAKPVRTFPMPRQV
YLMRASDDGSLYVAGPDIYKMDVKTGKYSVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF
TMLYTIARFKDDKQDPATAEPLYGYLSIDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI
YGVLNRLAKYDIKQRKLIKAANLEHTYYCVTFDKKGDKLYLGGTFNDLAVFNPDTLEKVK
NIKLPGGDMSTTTPQVFVR