Protein Info for PP_3391 in Pseudomonas putida KT2440

Annotation: putative Tartrate MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 26 to 43 (18 residues), see Phobius details amino acids 64 to 82 (19 residues), see Phobius details amino acids 95 to 115 (21 residues), see Phobius details amino acids 121 to 145 (25 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 189 to 209 (21 residues), see Phobius details amino acids 247 to 267 (21 residues), see Phobius details amino acids 289 to 311 (23 residues), see Phobius details amino acids 323 to 341 (19 residues), see Phobius details amino acids 347 to 368 (22 residues), see Phobius details amino acids 376 to 400 (25 residues), see Phobius details amino acids 412 to 433 (22 residues), see Phobius details PF07690: MFS_1" amino acids 35 to 398 (364 residues), 165.1 bits, see alignment E=1.1e-52

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_3391)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88HG7 at UniProt or InterPro

Protein Sequence (438 amino acids)

>PP_3391 putative Tartrate MFS transporter (Pseudomonas putida KT2440)
MVALTGELARERNDSHINELLLYRRVAWRIMPLAIICFLFSYFDRINISFAKTQMQQELG
LSDAAYGLAASMFFVGYVLFEVPSSLGLKRYGAPAWICRIMVSWGLATAALVFAYTQYTL
YFLRFLIGVMEAGFGPAILFYLACWFPRKHLAKMNGLWFLAVPLAGAVGGPAAGFLLGTM
DGVLGLAGWHWLFLMSGLPCVLLGLLVLWKLDRDIEAAKWLSREEKDLLAENLAQDKRTA
KPILGSIWRVLLTREVAIMAFIYYVVKTASYGLNFWMPHLIKSSGVQDMLWVGVLSALPY
AVACIGMVLLTRHSDRTGERKRYLVYCLLAAAVGYLLACLFSDSPFAMMTALVLATAGTF
IAIPIFWTIPQSTFSGLAIATGTAAINSVGQLSGIVAPVMVGKINDLTDSTYMGMLSIAP
LILVACLVVMRYVRNPKS