Protein Info for PP_3302 in Pseudomonas putida KT2440

Annotation: RND efflux transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1030 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details transmembrane" amino acids 339 to 357 (19 residues), see Phobius details amino acids 364 to 384 (21 residues), see Phobius details amino acids 391 to 415 (25 residues), see Phobius details amino acids 431 to 454 (24 residues), see Phobius details amino acids 467 to 490 (24 residues), see Phobius details amino acids 520 to 547 (28 residues), see Phobius details amino acids 861 to 879 (19 residues), see Phobius details amino acids 886 to 908 (23 residues), see Phobius details amino acids 914 to 935 (22 residues), see Phobius details amino acids 963 to 983 (21 residues), see Phobius details amino acids 989 to 1013 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 9 to 1010 (1002 residues), 501.2 bits, see alignment E=2.7e-154

Best Hits

KEGG orthology group: None (inferred from 84% identity to eca:ECA2929)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88HQ1 at UniProt or InterPro

Protein Sequence (1030 amino acids)

>PP_3302 RND efflux transporter (Pseudomonas putida KT2440)
MSQLRFNLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGAT
AQEMQDLVAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKA
GDQAKLMPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKV
NIIGEQAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAF
DQLAKIRETPVVAQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLD
LGKALEAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMGW
RVGVVVAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEE
GYDRIKASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWV
VAVAFTPYLGVKLLPRIKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWLVAGTVVSTFVA
AVLGMGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQEEAKIVTTYI
GQGPPRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRVTQLV
FGPYSPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSLNQDR
LQSVGLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTLVGSN
GQRVPVSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPIVTQL
PAGYKIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLGLIG
VVPVLLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQRA
RPVLLTALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSIWFKIRPNSR
IAKPEAADRA