Protein Info for PP_3263 in Pseudomonas putida KT2440

Annotation: phospholipid modification enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 42 to 64 (23 residues), see Phobius details amino acids 84 to 107 (24 residues), see Phobius details amino acids 127 to 150 (24 residues), see Phobius details amino acids 162 to 183 (22 residues), see Phobius details amino acids 203 to 225 (23 residues), see Phobius details amino acids 231 to 250 (20 residues), see Phobius details amino acids 260 to 279 (20 residues), see Phobius details amino acids 285 to 301 (17 residues), see Phobius details PF03706: LPG_synthase_TM" amino acids 18 to 293 (276 residues), 45.8 bits, see alignment E=2.9e-16

Best Hits

Swiss-Prot: 49% identical to YBHN_ECOLI: Inner membrane protein YbhN (ybhN) from Escherichia coli (strain K12)

KEGG orthology group: K07027, (no description) (inferred from 100% identity to ppu:PP_3263)

Predicted SEED Role

"Inner membrane protein YbhQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88HU0 at UniProt or InterPro

Protein Sequence (317 amino acids)

>PP_3263 phospholipid modification enzyme (Pseudomonas putida KT2440)
MARKSWQTWGKRLFTLAFLILIPVLLYLLARNLDWNEVRQSLLAYKPGTLAIGLAIALCS
YFTFASYDLLARAYTGHTLPARQVLPVAFVCYAFNLNFTTWVGGVALRYRLYGRLGLDTA
TITRILTLGLLTNWMGYMLLAGTVFALGLVEMPGNWAVGTTGLRLIGLLLLAIAGGYLLA
CGFAKKRTWCWRDHEVTLPSLRLALCQVALGASNWALMALLIFWLLPGEAFYPSILGILL
ISCVAGVVAHIPAGLGVLEAVFLALLHGQMAQGTLVAALLGYRTLYYLIPLLLAVVTYLI
LEKRAKAMRRRDKPAQT