Protein Info for PP_3184 in Pseudomonas putida KT2440

Annotation: Mn(II) copper oxidase A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1131 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF07731: Cu-oxidase_2" amino acids 800 to 889 (90 residues), 35.4 bits, see alignment E=1.7e-12 PF17803: Cadherin_4" amino acids 933 to 990 (58 residues), 46.7 bits, see alignment 7.5e-16 PF17963: Big_9" amino acids 935 to 1027 (93 residues), 57.8 bits, see alignment E=3.4e-19 PF17892: Cadherin_5" amino acids 935 to 1030 (96 residues), 38.6 bits, see alignment E=1.5e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_3184)

MetaCyc: 92% identical to McoA manganese-oxidizing multicopper oxidase (Pseudomonas putida GB-1)
RXN-11646 [EC: 1.16.3.3]; 1.11.1.M1,1.16.3.3 [EC: 1.16.3.3, 1.11.1.M1]

Predicted SEED Role

"Glycoprotein gp2"

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.11.1.M1 or 1.16.3.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88I18 at UniProt or InterPro

Protein Sequence (1131 amino acids)

>PP_3184 Mn(II) copper oxidase A (Pseudomonas putida KT2440)
MKTPAVSHASRRAFQLTSVTALMISLGLITAMASPLDDNSMPPPTDPSAYTDQPDDPTSA
LLELNTMPEANEGSLELTDGVYGDRNTVRTDNVLPPALQTSDKYPTNGKPSPLFGAQPFT
QQLLLFEEFGSEKLDPTTPVPDLTFPVPTLGAAPAQDPNVVARSGPSGSALEAFLKQPGL
YPFPTQYANVLDRNPWKAQIEMFLNRQPVGSPAEGRPPGKGWSHQRWNEFYPQAAFKTAQ
AGARINLGLRDRKQLHNYAVGEFAPGGLYYQTSDIPTTLGTTKGIDTRFHPNMPLQNHKS
LWTFDGTFPPKLLMVRYGQPILMRHYNALPIDPSANGGFGLHTISTHEHNGHSPAESDGF
ANAYFFPGQYYDYRWPVQLAGYDTINTRAQDPRAAFPCSPGETLFVNDGSPGLKTCENGS
IKIRGDWRETMSTHWFHDHMMDFTAQNVYKGNAVMMNYYSALDRGNEALQDGVNLRFPSG
SAMPWGNRDYDVNLVIADKAWDANGQLWFNPFNTDGFLADQILVNWQYKPRLKVRARSYR
FRLLNGSVSRYFKFAVVREIAGNSGEFKGPSGSNLSYARVPFHMIANDGNIMEHAVPFDG
TMDLNGDGNLQDNNGVLPVQAIAERYDIIINFAKNGIKAGDKLYFVNLMEHDSGKGPKQA
IPLADVLSEKYKAVIKQTSKGPQWDNGDPAVGKFLQLWVQPYTGQDLSMDPVAYEPAKPG
KAAGLKMLPLPIDRDAAADQAKLKDARHREFIFGRSDGTDTTPWTIKTDGGFGYSMDPRR
ISAAPQLANQSTDGGFSGDGTLEVWKIVNGGNGWSHPVHVHFEEGVILSRDGKAPPEWEK
WARKDVYRIGSEPDSSEEVEMAIRFREFAGTYMEHCHNTQHEDSSMLLRWDLEHPGQFQV
MPTPLPGWDGVRYMASVGLPTFRTKTDDDDDDPANKPPVVANDSAATTAGKPITLNVLAN
DSDPDGNVPLTVTGLSQPDSGQGTVSTDGSTVTYTPPATVATPFTASFNYTARDTKGADS
VTPATVSIAVTPAVAADELKVTSATVQLRSGNRFTWDVQGTTTVATGNSISVTAATTGGP
VSLGNATLTATTTGARWRVAVTTTGFGPATPATVTVKSTLGQTVTAPVTYK