Protein Info for PP_2957 in Pseudomonas putida KT2440

Annotation: Acetyltransferase, GNAT family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 transmembrane" amino acids 163 to 180 (18 residues), see Phobius details PF00583: Acetyltransf_1" amino acids 16 to 125 (110 residues), 69 bits, see alignment E=1.3e-22 PF13673: Acetyltransf_10" amino acids 22 to 145 (124 residues), 50.2 bits, see alignment E=7.8e-17 PF13508: Acetyltransf_7" amino acids 43 to 126 (84 residues), 57.4 bits, see alignment E=4.8e-19 PF08445: FR47" amino acids 69 to 128 (60 residues), 23.2 bits, see alignment E=1.7e-08 PF11814: DUF3335" amino acids 159 to 361 (203 residues), 294.6 bits, see alignment E=1.1e-91

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_2957)

Predicted SEED Role

"GNAT family acetyltransferase VC2332"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88IP2 at UniProt or InterPro

Protein Sequence (364 amino acids)

>PP_2957 Acetyltransferase, GNAT family (Pseudomonas putida KT2440)
MAFDFRFASVADIDALVALEQDCFTLDRLSPRNFNWMVRRANASLIVAEQQGHLAGYALL
LFHRGTSLARLYSIAVSPAWRGHGLGQQLLEQAQASALERNCAWLRLEVRADNPAAISLY
ESNGYQRFAVVENYYEDHSQALRFEKRILRSAPPPARQVPYYAQTTEFTCGAACLLMAMA
AVERARAMHRSEEIQLWREATTIFMTAGHGGCSPQGLALAAWRRGFEVCMVVSQPGSLFL
DGVRSTQKKDVMQLVEDGFAGALAETDVHQVLAPGLDVRSALQDGFRPVVLISSYRFTRL
KAPHWILVTGCDDEFVYLHDPDVDHSRQKRILDCQHLPVSHAEFQRMSSFGRQRVRAAVL
LRGR