Protein Info for PP_2755 in Pseudomonas putida KT2440

Annotation: sulfur acquisition oxidoreductase, SfnB family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 TIGR04022: sulfur acquisition oxidoreductase, SfnB family" amino acids 25 to 414 (390 residues), 622.3 bits, see alignment E=1.5e-191 PF02771: Acyl-CoA_dh_N" amino acids 38 to 137 (100 residues), 57.6 bits, see alignment E=2.5e-19 PF08028: Acyl-CoA_dh_2" amino acids 257 to 389 (133 residues), 69.5 bits, see alignment E=5.4e-23 PF00441: Acyl-CoA_dh_1" amino acids 259 to 386 (128 residues), 34.7 bits, see alignment E=2.9e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_2755)

Predicted SEED Role

"Acyl-CoA dehydrogenase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88J94 at UniProt or InterPro

Protein Sequence (414 amino acids)

>PP_2755 sulfur acquisition oxidoreductase, SfnB family (Pseudomonas putida KT2440)
MEQQMTQSQPADLREQVSSAPRRPAQIIRSDAEAIEVAQRLAEDFAREAAWRDRERRLPW
EELERFSESGLWAISVPKAHGGAGVSYVTLSEVIATISAADSSLGQLPQNHFGVLSNLGL
TGSEAQKHRYYAKVLQGYRFGNAFSEARSQYVTTFQTQIRFDGDSAVLDGEKAYCTGALF
AHIVPVAGVDEEGRPHIAFVPRDAAGLTVIDSWDGFGQRTTASGQVRIEGVRVPASDVIP
AWKAYDQPTADGPISQIIQAAVDTGIARGAFAETLRVARQARPWVDSGLQHGWQDPLGQA
LIGELAWRLQAAEAILQRAAEAVDRAVAEPSEEHVAEASVVVGQAKVLSTEISLEASSRL
LELGGTRSVSASQGLDRFWRNARTHTLHDPVRWKYHLVGNQLLNGIKPQRHSWN