Protein Info for PP_2739 in Pseudomonas putida KT2440

Annotation: putative Sensory box protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 TIGR00229: PAS domain S-box protein" amino acids 8 to 131 (124 residues), 77.5 bits, see alignment E=4.9e-26 PF13188: PAS_8" amino acids 9 to 64 (56 residues), 34.4 bits, see alignment E=3.7e-12 PF00989: PAS" amino acids 10 to 122 (113 residues), 46.9 bits, see alignment E=6.3e-16 PF08448: PAS_4" amino acids 14 to 125 (112 residues), 30.3 bits, see alignment E=1.1e-10 PF13426: PAS_9" amino acids 19 to 124 (106 residues), 75.7 bits, see alignment E=8.1e-25 PF08447: PAS_3" amino acids 34 to 118 (85 residues), 36.6 bits, see alignment E=1.1e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_2739)

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88JB0 at UniProt or InterPro

Protein Sequence (151 amino acids)

>PP_2739 putative Sensory box protein (Pseudomonas putida KT2440)
MSPMINAKLLQLMVEHSNDGIVVAEQEGNESILIYVNPAFERLTGYCADDILYQDCRFLQ
GEDHDQPGIAIIREAIREGRPCCQVLRNYRKDGSLFWNELSITPVHNEADQLTYYIGIQR
DVTAQVFAEERVRELEAEVAELRRQQGQAKH