Protein Info for PP_2612 in Pseudomonas putida KT2440

Annotation: conserved membrane protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 996 transmembrane" amino acids 622 to 642 (21 residues), see Phobius details amino acids 661 to 683 (23 residues), see Phobius details amino acids 694 to 713 (20 residues), see Phobius details amino acids 716 to 734 (19 residues), see Phobius details amino acids 747 to 769 (23 residues), see Phobius details amino acids 778 to 804 (27 residues), see Phobius details PF20249: VasX_N" amino acids 13 to 165 (153 residues), 83.3 bits, see alignment E=9.9e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_2612)

Predicted SEED Role

"FIG00953485: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88JN7 at UniProt or InterPro

Protein Sequence (996 amino acids)

>PP_2612 conserved membrane protein of unknown function (Pseudomonas putida KT2440)
MTNASVSSATSGPACSARVPILPVRYAIVPRTADAPACRYADAGFNLEQGFPTLQHSAYT
LRALRPGYVYVFMKGPRGEKLVIHEYVGAGLYKELRYQGLEDYHRRERYLSGQSTGWVWA
DTCQDTAEEVWIGYSPHLWTNAITARITGSAALRKRHMRQLDMAELVSGNQAPSTQPHVL
PVSALQTWVEDFKPTERRMPLTWSSDPVTETLPIGNLHAIARHYPWTQPKVPVVVALADA
EGMALDLSLSVSAYQHQLRDLMPAEQLEHTKPAQPPEQERVPACYRLDAEQLSPQSRDFH
HRNLVAMLLNKTLESLYPADAPSPELAAFRLGTSRRGPALSPAESHFQALTHEDYSPNGA
RLAQRLDVDKYRRFLAERDALERRIAALRNLALQASNDHDAWLATAEPQHIDNPYSLAAA
LACYDRDERTSARGLEISLALLIHPMGQPTPGTEDHDRRFKRLEQWLDQHDSPLYTALAP
FNPFKDKADSIGTLFGASDNVIEGLAGRFPAMADITDLTAQSVNTVVLKRLRGQTRWDAS
HGLRRQVQLAAREANAEKALGLLAARYRITEQAITENPFSQEVQRYLKSGMAQVEEMKAL
RISGSRTVSIELTTTARAKPNFLGLLTSGGGGGLNAGMLWFNILSLKTAYNSLQKSDAPE
YTLGFASSVFGVIGAAAATLVSVRATQKAMMLKWISTAPGMAFGNGIINFLTSNLFARAS
GYPAIIMGFSSDIFKAIRQWQNGNLISGLYTAAASATTALGSILVLEGSLAIAGTTVLIP
FAGWTAAGIALIGATLIGGGLFLYSKAHSRLHSPLELWASRSIFGTRENDGEIRDNIKLD
FDKKLPPFRHIHEEIKSWQIEFFSPKALLAPYSEQLGLGALTTHLDINNKWPTPDWATII
HTQVTKQNATLELTILLPEFVVGQSEWSGSLVSQNLDRQTTPLQINPDCHITQAGLLLHY
KTDARQIRSATLTINYYANQGLDDDTPSTTTIHLER