Protein Info for PP_2594 in Pseudomonas putida KT2440

Annotation: Ferric anguibactin transport system permease protein FatD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 47 to 68 (22 residues), see Phobius details amino acids 80 to 99 (20 residues), see Phobius details amino acids 105 to 123 (19 residues), see Phobius details amino acids 131 to 154 (24 residues), see Phobius details amino acids 176 to 195 (20 residues), see Phobius details amino acids 207 to 228 (22 residues), see Phobius details amino acids 233 to 253 (21 residues), see Phobius details amino acids 265 to 285 (21 residues), see Phobius details amino acids 291 to 310 (20 residues), see Phobius details PF01032: FecCD" amino acids 8 to 309 (302 residues), 192.5 bits, see alignment E=4.8e-61

Best Hits

Swiss-Prot: 60% identical to FATD_VIBA7: Ferric-anguibactin transport system permease protein FatD (fatD) from Vibrio anguillarum (strain ATCC 68554 / 775)

KEGG orthology group: K02015, iron complex transport system permease protein (inferred from 100% identity to ppu:PP_2594)

Predicted SEED Role

"Iron compound ABC uptake transporter permease protein PiuC" in subsystem Heme, hemin uptake and utilization systems in GramPositives

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88JQ5 at UniProt or InterPro

Protein Sequence (313 amino acids)

>PP_2594 Ferric anguibactin transport system permease protein FatD (Pseudomonas putida KT2440)
MRVACLILFLVLCAASLAVGVRELAWSQLLTLQGDAWLTLTASRLPRLAALILVGVGLAV
CGVILQQIVRNRFVEPGTTGGLDAARLGILLSLGLAPAAGALLRMLFALAVCFAASLLFV
ALIRRIRARNAVLVPVIGLMYGGVLSALAEFYAYRFNLLQSMQGWLLGDFSKVVQGRYEI
LYLIVPIVLLTYLYAQRFTVLGMGEGMATSLGLNYTANVTVGLLLVAVTVSASVIIVGAI
PFVGLVVSNLVALRHGDNLRRTLPLVALGGAALLLVCDLLGRLLIYPFEVPIGLTAGGLG
GLIFLGLIIWRQR