Protein Info for PP_2566 in Pseudomonas putida KT2440

Annotation: conserved protein of unknown function containing Leucine-rich repeat domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1629 transmembrane" amino acids 425 to 450 (26 residues), see Phobius details PF20178: ToxA_N" amino acids 82 to 339 (258 residues), 158.6 bits, see alignment E=4.1e-50 PF14496: NEL" amino acids 1286 to 1535 (250 residues), 209.3 bits, see alignment E=9.9e-66

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_2566)

Predicted SEED Role

"Leucine-rich repeat domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88JT1 at UniProt or InterPro

Protein Sequence (1629 amino acids)

>PP_2566 conserved protein of unknown function containing Leucine-rich repeat domain (Pseudomonas putida KT2440)
MTTPTPLHQNQITRSLPKWSKALHPTHTRKVVQSLYKEYLDEDGSPYAWYATADEPTREQ
LHNALQTRNKRLAQVKQALGEFKDIIAFCGPLLTERLKLNVPVDRAQYVFQPFESEANIW
VGVPDVETPLVPDVEADVLATRPVGQPQTRSLLEAALHNFEGLDEVGPYSRLTNAAGSDT
PLAGLTMADFVRHCRALDLGKRYQDHLLATHEGANRAEIQRLSIAANREALRVQALIARL
KGLLSKAGLDALAQLCDGSPHPTYDNEALHCWNFNLFDVPVHEVLFIGPDNPYRTNPCIV
YVPGDSEHPVREFASRQEAGKHLRSRLLQSEFRRALVHFAYKDRQKELAVKLEIALFEED
EAGIRKPRIMPVIPFTLSPIRTDPWTNLYNAHLARMKADAKTIAVPTAEVDANARNERLK
YWFDLGMNVLNVAAFFVPGLNTVMLGVFAYDLMSSVFTGFEAWEEGDTRQALAQLESLAI
NAGVIAGFAVGTRIVQASGFVDALKSVWHEDKEVLWHPDMKPYASTAAIPEGAQPDLLGH
VHVDGKTYLKLDGTLYEVFQGADQQWRVRHPDDAQAYAPRLLHHGNARWQLAHEQPLEWE
REQLARRLGSHSAGLDDSELDHAMRTTGTDPDVLRRAQAAGLPPPALLIDTLQRLQLDNQ
TQQIINCVRHGLPLAAYKNFALPELLRLPGWPEGNVLKVYQGPEPWGESVRYGPPHTLGQ
TEIEITRTDLDNGQLSQTVLDQMDEEAIEQLLGDTPTEHRASALNNKLAQHLEQHREALF
ESLQQRRRPTHPPTAQTLARQFPGLPDSALEELLANISNAERERLTNGRVPLRIAEEARL
LQARARLDRALLGLFRPSLANDDSLRIKQALQAAHPQAEPARLLQLALGDRQHCASLLGQ
QPINPRFRSPLRLANGRLGYPLSGRGLQGRALPAARRLRALYPELSSEQITGLQAELARG
GDLGSAINQLEVEQRTLNRDLNRWVSTARTLEERFDRQQCTERLMSASRREGGAQAETLV
LDRMQLEALPAFTARMPHIRNLRLEGLQMRRLEGSFLTNFPNLETLEIVGNPDIDAETLF
EALRSAPRLRELGLTDNGLTTLSPTAQQAIGAMPGLRLLWLSRNRLQLDTTSLGFLTRLP
LDALGLAHNQITLDESLAAQFQDMIHPVLLHLSGNPLQLAPDLRFMARLVHLELERCELQ
QWPDSLTVLMSQPQYQLRYLNLSSNRIRTLPDLPGVLRTPFARDVAAHLPERRWLFNYNT
LEAQTRARLGSSGVNVFEHAEDVPLWQGVFRGEASNAEEQLWSDLFDQGENAALLGVLER
LAQSAEAQRDGEALRTRVWKLLDDAAHDTVLRERLATVAGDFPPTCGDAGADAFSALEIE
VLAHEAAAVAGSRPADLLSLYGKLYRRSQVNQLADRISWRRSLRKQALLDGAFDENLPPY
DELDDPSAFPDSELQTGLVDDVEVRLALRQSLASALDYPEPSRGMLYRNTARINDTIIEM
VKAAVLSLDRDAIAREQWLTQQPGWVEYLKREHAAQFSLITDFWRPGLDYLYYCLDETAE
PVTSLDSSVRRALARVMPESPVDADGRLRRVVLNEQQYRQGVDALTAEQQQVETGLLISL
TRQTQTIGR