Protein Info for PP_2429 in Pseudomonas putida KT2440

Annotation: putative Membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 21 to 23 (3 residues), see Phobius details amino acids 38 to 61 (24 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 96 to 113 (18 residues), see Phobius details amino acids 120 to 136 (17 residues), see Phobius details amino acids 142 to 163 (22 residues), see Phobius details amino acids 174 to 192 (19 residues), see Phobius details PF01810: LysE" amino acids 15 to 186 (172 residues), 58.6 bits, see alignment E=3e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_2429)

Predicted SEED Role

"Transporter, LysE family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88K62 at UniProt or InterPro

Protein Sequence (194 amino acids)

>PP_2429 putative Membrane protein (Pseudomonas putida KT2440)
MSQSLLPFILFALVSSISPGPTNLLILAHGARRGLRASLAPIVAACGAAAAIVLLVGLGL
GELLLRYPLAQQLMSWAGVLWLSSLAWKMLRSAAAPLHAATAQGFSALSAASLQVVNPKV
WLMAVAVVGVFAAPSLPVWQLALVFLLIALPSMAAWAVLGVGSARWLQAPGRLRVFNQVL
AGVLLISAWAAVLA