Protein Info for PP_2382 in Pseudomonas putida KT2440

Annotation: putative transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 25 to 64 (40 residues), see Phobius details amino acids 79 to 120 (42 residues), see Phobius details amino acids 145 to 165 (21 residues), see Phobius details amino acids 171 to 189 (19 residues), see Phobius details amino acids 222 to 244 (23 residues), see Phobius details amino acids 256 to 276 (21 residues), see Phobius details amino acids 288 to 306 (19 residues), see Phobius details amino acids 312 to 337 (26 residues), see Phobius details amino acids 350 to 372 (23 residues), see Phobius details amino acids 377 to 394 (18 residues), see Phobius details PF07690: MFS_1" amino acids 13 to 190 (178 residues), 49.1 bits, see alignment E=4.1e-17 amino acids 228 to 390 (163 residues), 35.8 bits, see alignment E=4.5e-13 PF05977: MFS_3" amino acids 19 to 355 (337 residues), 33.1 bits, see alignment E=2.2e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_2382)

Predicted SEED Role

"FIG00964909: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88KA8 at UniProt or InterPro

Protein Sequence (405 amino acids)

>PP_2382 putative transporter (Pseudomonas putida KT2440)
MLTLRINPGTRSLSLGYSFSKCGEFAFEAAFAVAIVSITDADMLLIGIAYFFRYLPSVVF
SPLGGWLADNANKKHTLLAIEVTKGLLALSFFALFSVFTPVLLALVGLAMVMTALECLYV
PTFRAYFPDLVEKDELATVNSGIQVIEDAASILGPLVFSACVLLLSREATFLFFAMCLIV
SAICIATLTPARCSVQQAFDGCAIIRDAAGSVSQLRAGNAPLFAVIGCTTLCAMFATSVI
RFILPASVLEHFASEAAVGYVFSLLAAGTVVGGMLYTRFNPRTTAGLVLRYWMLYGGLFF
AAAVALQFNNWLFLLILFLVGFIGAFVDIAIVTNIQCLSREHEVGRNFSLYYFTAVMSDA
VSGLIASLVFVLAGPATFIWMTLMLLIAPVRWNMKGRGPDVDSRT