Protein Info for PP_2369 in Pseudomonas putida KT2440

Annotation: Leucine-rich repeat domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1395 transmembrane" amino acids 380 to 404 (25 residues), see Phobius details amino acids 430 to 450 (21 residues), see Phobius details PF20178: ToxA_N" amino acids 56 to 304 (249 residues), 160 bits, see alignment E=2.6e-50 PF13855: LRR_8" amino acids 931 to 989 (59 residues), 33 bits, see alignment (E = 1.2e-11) PF23211: LRR_LRWD1" amino acids 937 to 1015 (79 residues), 29.5 bits, see alignment 1.8e-10 PF14496: NEL" amino acids 1121 to 1336 (216 residues), 242.8 bits, see alignment E=8.9e-76

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_2369)

Predicted SEED Role

"FIG00955292: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88KC1 at UniProt or InterPro

Protein Sequence (1395 amino acids)

>PP_2369 Leucine-rich repeat domain protein (Pseudomonas putida KT2440)
MTPSVIPADSIDALIARQLPGWLKRASAQELTELRAAALRQQRAQDQVDAWLGAITPLDE
FAESLLKRAPEARSIKQVDLRQAQLRLVTLQPKPSISPALPSTSTRIVSTQTLLSAALHN
FHEKEMQPGWFAAGSQLVTASGHLLPLSAQAFVRLCRDIDIGRRYQSHLQSKLEGEGGAV
ESTLEEALRANLALAAIAARIKDEIDEQTCQWINQAVGTASFLPADNAVLKCHTLRLLGK
EVIGALVIEVRQNARLLGVIAWFPEDPYAPVSWHTSWELLYMTLGIRLRNEAYRRYFQRF
VAERDRIAFCAALNALLSHGNTVLPLELDGRCFAIEGDVFVALRQARIEKMLDDARVLAV
STEDEDVADRRARLQGYLDLGLSVAGLAALFVPVLGQALLGLTVVQLAGEVYEGYQDWQL
GDRDAALGHLFNVADTVVMAAVTAAGATALGKLAQRVARVDAMVPVSLGDGQLRLCDPSL
SGYQREGVDLMVGQAVNETGRSLRRLHDAVYEVSEGDDGAWRIHHPSRPGAYSPALEHNG
AGGWVHEFEQPQRWHDPAYMVRRLASRTAQVPDEAVSVALQTTGFEADCLRRLLLENAPA
PARLLDAIERQQLHRDFPMLRGDAFEEVFNERQISPQAADRVLMRDFPGLSHRCAREIVE
GASSIEMESLTGAGRVPLALAERARWAIRDSRIDRACAGLRQAAAENDDTGKLALGLIDA
IAPWSAGVNVELPAAGRGGLLQTLRRQLDSRQRQLLGISQMTDDALGERLGREALADREA
AARMIGLARVGQGIRPPVRLFDGRLGYPLSGHLTGTRQALRRTLNHVYPVMSSEQLEAYL
QDLAWRGVDPWNHVSQLLQAKVSLKQALQAWRNDAGLNIVRRLRRFKVARRITASWQRFT
PGEVAGDYHLTLVGERVGELPTLPDNVSFDHITHLTLRDMQVTSLDAGFLGRFSKVRNLD
LRNNQLTRLPAGIEQLTELRTLRLGGNQIVLSSEDNLRLSQLVELRRLELNGNPVGLLPP
LASFPLLRRLSLRNTGLGELPADLARHGNLELLDMRDNQIQTLPEALSLVPLRLWRGLEL
HDNPLSDETLQRLQLARASAGAAERRRVAHATAIPNAAAPWLSGFTPAQREVRLASWNRL
NQEAGAQDLFRFFSDLRALREYDAQPRDLQARVWHILEACEQHAEVRASLFEQVARPRSC
SDELLLTLSELEVGALVAKAGTAGTGLQKERALVRLGRSLFRLDKVNAIAARHIADYFSN
DPVEVYLTYRVRLADSLDLPVQPSHLSYESFSGVGREDLDAARSEVLRQETPQALAQALA
DRTFWQDYLQEQQAARFSRLDEPFQQRLDALLEQSKTLSDGDYFAQVEHICAAREVAKRQ
LLLELSREAIQRHGL