Protein Info for PP_2287 in Pseudomonas putida KT2440

Annotation: Phage internal core protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1569 transmembrane" amino acids 1381 to 1399 (19 residues), see Phobius details amino acids 1417 to 1436 (20 residues), see Phobius details PF01464: SLT" amino acids 15 to 107 (93 residues), 44.6 bits, see alignment 4.9e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_2287)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88KK3 at UniProt or InterPro

Protein Sequence (1569 amino acids)

>PP_2287 Phage internal core protein (Pseudomonas putida KT2440)
MTQISLEDARKITDSTEQQYGLPQGTLFKMSGEESSFNLDAESGKGAEGPFQLMPATQKA
YGVTDPHDYTQAADAAGRYMRDSLAKYNGNMDMALADYNGGPRAAKALAAGSPWPETRDY
LSKFNGTTSAAGQTPSAKPDPLSSAFTSGDSVNPDQSASASDLVQMQAQQRAENGGLINN
VENIPQALALGFASDNSVVNWWRDRGTQSTDWNFSWDNDKAGKYLEGIPEKNWDYILQAT
SDSDADFRRSRMQQSMQDEQKLSEMGVAGFGGRLVGGLMDLPTLIGFVPGMGGEGLLTAG
SRIANAVRMGVVGAGTNVGYDALMNRYNPLRTDDDLYISAAMGLGLGAIGGSLAHVEGPL
AEENARLAQWGRQESSGAQIKELTDSGLMRPGEGALSQPEFLRRFGQDVDTKNTPGNAII
WRTEDGGSTRIHSPGEEPKTVDLPPEEPRAPEEPPAAGEPRDEPQEPSVGTPGRKQPWSE
EWDTPRYEASGGRDDNLILPSGVNRVSQLADYVRAYSKNPETVKVLNRVLKAVDLRKMNF
KVIEKGQKFGNAAMDAVIKTAKGAVLTPHQSTGDGIQMFLRGHSYMSPTGRLSDLSGLNE
ETFVHELVHAATVYKMHATSDRLMSTDPQISKATTDLSTLHGSMLKAAQSEFGEHWKSAL
EGRLRVNLDNPKEMIAYGLTNARFQQWLKGKALLGKPDASLWDRFVGGLRKLLGIGKNEH
NALSRLVELANPLTRPGGVSRTVRSPALEGSVDAQAAKAAHIPEVFGWGLGLENKLGKAD
FPTAVRALAAKLFGTSIGYKDHSVVGPNAWDDTTKWAEGWATQMKKTSLPQFQKWFQANG
FKWHQKAEAFDHFGSLVSDFIRGRDADFPDEVVRAGETVRKTLDHVADYINNPLKDEGRI
KLGLTETEIRDSDTGATSVVGTLEKNPNYLPRKHDVNKWNSMVNTWGHEAVTGWWARAYQ
GAREGISDEAANRWAKWYVRTVEEAHANRTQDAMGSMMMGTDREALKHSLMLNGGYSEEE
AVRVMDDMLPTKGTDAGRTASSLKNRNSVNELHTETWTGSDGTKSAVSLNDFIHTNAFEV
VEPYLRRMAGSVALAKHLDVYKGQDIEKAIMAATENKFGEGMRPGANLAGMRKDLKFAFD
RIQGLPMEEFSTLNKSLEMWRNFNVIRLMGGAVWNQVSELSQITGSMGWKAALQAVPTLR
ALRRDIATGKAPDDLLDHLENTIGGAGADYVARLNFSAKDDWVRHNGDTAFNRKLDAVDN
GLRKVAKGVLDYTGMTPLMIQQKRIHAIALVNHWVNHANGAASKLLTDDRLAWMGMSREQ
ANGVLADLKKYSTPRKGAFGPSHKLDFGAWVKDSPENYSRFMTAMHRESRRVIQENDLSS
MIPLMGTTLGKAMFQFMAFTMHGWNKSMLFAANHRDWATLSTVLHGGFLASLTYMGRTML
DSMGMNEENRQKFLDQRMAPGQIVANSFGKISQASLLPNLYDTVSPYPLFSGMRTTSDLS
SFVSNPTYQAINGLISMKKLVKNGLSDDSQTSASDIKNWARLLPLNNVAPVSTMLNMIAN
DYPTGSKQH