Protein Info for PP_2282 in Pseudomonas putida KT2440

Annotation: Minor capsid protein 10

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 322 PF21703: Gp10A-like" amino acids 56 to 320 (265 residues), 342 bits, see alignment E=1.7e-106

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_2282)

Predicted SEED Role

"Phage capsid and scaffold" in subsystem Phage capsid proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88KK8 at UniProt or InterPro

Protein Sequence (322 amino acids)

>PP_2282 Minor capsid protein 10 (Pseudomonas putida KT2440)
MSDANVSRLGQANLSGDAKALFLKVFSGEVLTAFQESCVTADKHLVRTITSGKSAQFPIL
GKISAQYHTPGAEIAGLSVPANEQIITIDDLLISHAFIASIDEAMNHYDVRGPYSTEMGR
ALSYTYDKHILQLGVLAARASAPVSTEAGGGSVTDSALLTDTTGEALVAALFAAAQKLDE
KFIPADERYAYLTPAAYYMLAQNTKLMNSLWGGQGSYAKGELPQVAGISLVKAVHAPFGS
NIATVANGGTALTAGTSDKYAVDATSTAALVMHKAAVGTVKLMDLAMESDYDIRRQGTLM
VAKYAMGHGILRPAAAVELKTA