Protein Info for PP_2065 in Pseudomonas putida KT2440

Annotation: Multidrug efflux RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1027 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 333 to 352 (20 residues), see Phobius details amino acids 358 to 381 (24 residues), see Phobius details amino acids 385 to 409 (25 residues), see Phobius details amino acids 430 to 451 (22 residues), see Phobius details amino acids 462 to 488 (27 residues), see Phobius details amino acids 525 to 543 (19 residues), see Phobius details amino acids 844 to 864 (21 residues), see Phobius details amino acids 873 to 895 (23 residues), see Phobius details amino acids 902 to 923 (22 residues), see Phobius details amino acids 948 to 969 (22 residues), see Phobius details amino acids 976 to 1003 (28 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1002 (999 residues), 877.8 bits, see alignment E=9.6e-268 PF03176: MMPL" amino acids 847 to 1009 (163 residues), 25.4 bits, see alignment E=6.7e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_2065)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88L70 at UniProt or InterPro

Protein Sequence (1027 amino acids)

>PP_2065 Multidrug efflux RND transporter (Pseudomonas putida KT2440)
MRFTDVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQ
GFVTQPITQAVSSVEGIDYLSSSSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRLP
EKAYDPVVELSAGDSTAVAYVGFASDSLSIPELSDYLSRVVEPQFSGIDGVAKVQSFGGQ
RLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADIQVDTDLTRVEDF
RELIIRNDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPSGNPLVIVEGIR
QLLPQIQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVIWLCLGSLRSVLI
AVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKSPI
AAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAGAVIVSGIVALTL
SPVMSSLLLQPGQQHGAMAAIADRLFGTLSGVYGRVLAYTLAHRWISGGVALLVCLSLPW
LYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAERFALKLDQVMKSIAETTDTWIINGTD
GPAASFGGINLSAWQARERSAAQVQAQLQQAVADIEGSSIFAFQVASLPGSSGGLPVQMV
LRSAQDYPELFQTMEVLKQRARDSGLFAVVDSDLDYNNPVVKVRVDRAKAASLGISMQAI
GESLGVLVGEQYLNRFALFGRSYDVIPQSIQDQRLTPAALSRQYVRAEDGSLVPLATLVR
LDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVAFLEQLTAELPPGFSHDWQSESRQY
VQEGFALMWAFLAALVVIYLVLAAQYESLVDPLIILVTVPLSICGALLPLALGWATLNIY
TQIGLVTLIGLISKHGILMVAFANEIQVRDNLDRAAAIVRAAQIRLRPVLMTTAAMTFGV
LPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPTIYAWLARDHRVSTARARQLVEA
ERQLGAL