Protein Info for PP_1936 in Pseudomonas putida KT2440

Annotation: conserved membrane protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 978 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 49 to 67 (19 residues), see Phobius details amino acids 87 to 105 (19 residues), see Phobius details amino acids 118 to 136 (19 residues), see Phobius details amino acids 462 to 472 (11 residues), see Phobius details PF07693: KAP_NTPase" amino acids 168 to 446 (279 residues), 235.3 bits, see alignment E=4.7e-74

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1936)

Predicted SEED Role

"FIG00931729: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88LJ5 at UniProt or InterPro

Protein Sequence (978 amino acids)

>PP_1936 conserved membrane protein of unknown function (Pseudomonas putida KT2440)
MGKMKPEMKIPEFMVFLRILSTGFLLAEVWRIASYLGSNYAPIILKENIWVQALTLSMPL
ILCINYSLKRGATEDTVRIIKSCRIDLLAALIFGIWANSLLAPRLKSLHEVFEAADPYWA
PAILTILCAIILSPTVQHLRALFKKETSQLYFLSDDEIHKSTEDALHCDPQAESFAKTIM
ASHAHPGLVFGIDGPWGVGKTSFINLAARYWEKHSNEIIICRFEPLRFASEPDLTDRLIK
ELSATIQREAYAPEFRPAASRYSRLIKGKADISFLGFKLAIEPSQETLDELLDDIDDVLR
RIGRRVIIVIDDLDRLDSKTANSVLFATRRTFKLSQATFILCYDTEILAGIQEETSRARE
FLEKFVTVKLSLFVDSSSIQNFLTRDWQNEEQKLTSVPSDTMIQLGAVLTELSNILEGDN
AASYLPYVRNLRKVKRFVNALLILQMERSDLSRTDFNKIDLINLILIHLFYPGTFRQIYA
EETEGRSGRFSLKRNLEADNFINTPEFSKQLENEPAQAFLLRQLFDVETLELPTRSDIEP
SVRASRACFNHEGSRNLESYLKLIVRFATPEPQDTFALYQEAVNSVMNGEKIATILTSKN
FNLIKHERAHDQFWRLLVNSSSSFNHIAAEDAINTLIEYLPRYASIGRFDGSLRHRSIYA
LLRLLDRAGWGRTAGKRLVNSNENVVEIAQRIFGEGEYRNKGILDRITSDDRGALGWNDL
MLLRLQCSADRKGQLYNLQKALIVVDHPNAATSGVISRLAIMGMRRISQLVFAKFKAEHI
DKKINFYDTVDAIPDENFDTTGLLLTHESDPDAKNLITSNILASRSGVKSFVIYQLCNSK
GANGSGVGCGYYDESGNEDKHGISILVESYVFDFCFNPNVDKNNAYHFLDYCLSNLSNSY
FEDIPGGGFVAARSGLVGCFTLESFSLYWREHGDAVRAKAKEMPDRKVVTSNYVASYAED
LDGVFKVLDEITEGINLT