Protein Info for PP_1882 in Pseudomonas putida KT2440

Annotation: conserved membrane protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1632 transmembrane" amino acids 1436 to 1460 (25 residues), see Phobius details amino acids 1468 to 1526 (59 residues), see Phobius details amino acids 1538 to 1557 (20 residues), see Phobius details TIGR01643: YD repeat (two copies)" amino acids 825 to 854 (30 residues), 24.6 bits, see alignment (E = 2.7e-09) PF05593: RHS_repeat" amino acids 825 to 856 (32 residues), 26.8 bits, see alignment (E = 2.8e-10) TIGR03696: RHS repeat-associated core domain" amino acids 1329 to 1408 (80 residues), 73.3 bits, see alignment 1.8e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1882)

Predicted SEED Role

"YD repeat protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88LP7 at UniProt or InterPro

Protein Sequence (1632 amino acids)

>PP_1882 conserved membrane protein of unknown function (Pseudomonas putida KT2440)
MSTESSLHSNALNFMSFMESGVDSRTGQYTLSIKLPELGANYFSGPELELSLNFNPLNMI
DSGWGRGWNLSLTQFAPHTQVITTYSGESFKVTGSSGSRLQMQEQRLAHFHFYREPAGPG
GNARYRVVHRSGLVEILEEMGSANGRIALPVEIYAATGHRIDLQYQPFNSSYMMLSSISD
EREEILLEIERDDSRIELRERPYQGDNGQPVALYAMNLINTDWVTSIVLPTHELASWRLE
YALVNGLLCVSKVEPPTGAREYLYYQDRGHLFPGDARPPLPRVTRHVIEPRGGQPAFQRT
YTYPGLNNFLGYGAGIGWSDNGLDNLYESKRYDYEYQTVETLRDEDGTALRDITRTFNRF
HLLTSTRTVQNNCVHEVTMQYNIKDVPFNQQVSTLQMPIREQTRWSLADNITRSRLETVE
TTYDTSGNIIWRKLANGVTETQEWYGTQAEDDYPGDANGFVRHLKSKTTTPASSGRGQAP
VLTQHYRYKALAPLAGNAITLNPMIVEHSETLTHAHDPAHPLEEKIYYYLDAPKSSLRHG
RRYQEVVKRNKLETTTQYQFNSLLDPLGGHQVLETRKTLFGYDGAQRSTVQRRSLLHGEK
LYELNENGVHTQWAYDALRRVTEERVSPETPFEAKKRYDYQLCASDADIARARVTNARGI
TTETELDGLGRPTRESRDNVLEARPGAFYEILAIQYDAYGNRIQESVTDWLQAQQYLHLV
TKTRYDDWGEQCCTIGPDDVEQHNVLDPIGNADHQGAIRYSWREGGRLKSRPQVQNRNGM
NVRSTRQARAISGKTETWLNLFNKPVLRKRLDALGELIGERRYSYDGLGRTLTETDERNH
TTAFSYDAWGRMLTTEQPNKTLLTRTYAEHSAEDLPTRLVVTPANVQLPARQIGAQYFDG
LDRLIGTTTGDRTEYFLFRDGESIPRQRINPAGETIEQDYNLQLTNEPISNTAPEEHASF
AYDPVSARLLSDDNRQCARRFEYNKANQLTAEHWEDKRDGKTWSRIHSSTLQDRLKNTHE
PYGEDTTHEYDAQGRLVSTLQGQLQAEFKYDDLGRIELITSHDRASAQALETKIEYDDQD
REVKRTWRQPGQPERTQETVWDKDDLLLSRTLQVGGVSRLVEKFGYDSHARLNMYNCTGP
DQPRDALGRSIAMQVFNFDAYNNIELTVTSFTGGPAAERATFIHAERDPCQLQRIEYTPP
RTAPNPEFSYDANGNLTRDEQARPIRYDSQNRLLGLNDSGAPDTYGYDAGGLLVSRPEAG
ERTLLLHDGQRLRMAVRDSLQTLYLHHDEQALGQQQKGTGAQSPLLLHTSASHSVIAESQ
AGSTRAVRYTAYGERHADDPLLGTLGYNGEALDPDSGWYLLGSGYRAYNPVLMRFHSPDA
LSPFGAGGLNYYGYCQGNPITFRDPTGHYSIGYSGQSRSLADLNSYSIWRGKALGAIGWT
GIGLGILFAAVASVAAVVVTGGVAAPAIAAAWAAAGGGISGAGAALSAGVGAIASVSLAV
GIKLAAAVATATLSVTGTALQTEAILSGHEKRNNIGTILNYSAAILGLAVGAMQLIAKIP
NLAWRAGSYTVTTITDDPLINSGKTLSELKMARQIIHPRSPVSVSKSKHFFPVAEDIPVG
HKIYLPSTEIRR