Protein Info for PP_1876 in Pseudomonas putida KT2440

Annotation: putative ATP/GTP-binding protein of the AAA+ family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 PF05673: DUF815" amino acids 35 to 288 (254 residues), 337.1 bits, see alignment E=5.3e-105 PF00004: AAA" amino acids 90 to 189 (100 residues), 22.5 bits, see alignment E=1.3e-08

Best Hits

KEGG orthology group: K06923, (no description) (inferred from 100% identity to ppu:PP_1876)

Predicted SEED Role

"putative ATP/GTP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88LQ3 at UniProt or InterPro

Protein Sequence (295 amino acids)

>PP_1876 putative ATP/GTP-binding protein of the AAA+ family (Pseudomonas putida KT2440)
MDARLIAFLDRAESVLARLEPLLPAQRPHIDWGTTLAARWQRDGRSGYLLPLDVSLDIRL
TDLIGVDKQRDQLGRNTHQFINGLPANHALLWGSRGTGKSSLVRALLAEHASAGLRLIEI
ERDHLADLPRVVEQLQKLPQRFILFCDDLSFEAGEGDYRVLKSVLDGSLEQAPDNVLLYA
TSNRRHLVPEKESDNENWKRVDGELHPSEAVEDKIALSDRFGLWLSFYPFTQDHFLNVVE
HWIGQLAQPAGLVWQRTEALDILAVRWATGRGNRNGRCAYQFARYWVGLQLLEQK