Protein Info for PP_1794 in Pseudomonas putida KT2440

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 PF00353: HemolysinCabind" amino acids 153 to 187 (35 residues), 23.7 bits, see alignment 3.8e-09 amino acids 191 to 223 (33 residues), 10.6 bits, see alignment (E = 4.7e-05) PF13946: DUF4214" amino acids 266 to 309 (44 residues), 26.5 bits, see alignment 5.3e-10 amino acids 311 to 363 (53 residues), 24.4 bits, see alignment 2.5e-09 amino acids 364 to 416 (53 residues), 52.6 bits, see alignment 3.8e-18 amino acids 418 to 469 (52 residues), 56.5 bits, see alignment 2.4e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1794)

Predicted SEED Role

"Large exoproteins involved in heme utilization or adhesion"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88LY2 at UniProt or InterPro

Protein Sequence (480 amino acids)

>PP_1794 conserved hypothetical protein (Pseudomonas putida KT2440)
MQYDNPVQSSDLLATLTAESANLSDSTIEAINSLLNLDNVETVEIAGINGNTVQLPESGT
ASIVQGTVDGAKGDQVIVDLAAAEAAGVNAYVLQSDANLVVNLEGNSNAAPADAQVFAAL
AAVDTSAIDLVVTTGNGDDVITVKGDQNTLIDAGDGNDTIVTGNGDNVVIAGAGNNNVTT
GTGDDTIILSGSNHADIVNAGAGYDVVQLDGSRDDYAFAVGNNFNVNLTGNQTASITDAE
FLTFVNGEEVETVALAHNDAEAAALRLYQGILNRDVDQEGAKFFTGYVNNGGSLTDVANA
LLDSSEFAGVNNANDVNDLYQALLGRGAADDAASSAWTDLLANGGSLADVAAAISVSAEA
QALDASNGTFVESLYEAALGREADEAGLQNWVSQLFNGASRADIAQAIVGSAEAASKANS
DFIDSLYQSALDRTADDAGKAHWAAQLEAGASQADIALAIVGSDEAVAHNDNVVVLHGQV