Protein Info for PP_1758 in Pseudomonas putida KT2440

Annotation: putative sulfurtransferase containing rhodanese-like domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 PF17773: UPF0176_N" amino acids 6 to 96 (91 residues), 100.6 bits, see alignment E=5.2e-33 PF00581: Rhodanese" amino acids 117 to 210 (94 residues), 38 bits, see alignment E=2e-13

Best Hits

Swiss-Prot: 100% identical to Y1758_PSEPK: UPF0176 protein PP_1758 (PP_1758) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: K07146, UPF0176 protein (inferred from 100% identity to ppu:PP_1758)

Predicted SEED Role

"Rhodanese domain protein UPF0176"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88M17 at UniProt or InterPro

Protein Sequence (310 amino acids)

>PP_1758 putative sulfurtransferase containing rhodanese-like domain (Pseudomonas putida KT2440)
MSQAIVVAALYKFVTLEDYVELREPLLKTMLDNNVKGTLLLAQEGINGTVSGTREGIDGL
LAWLRSDPRLVDIDHKESYCDEQPFYRTKVKLKKEIVTLGVPGVDPNKAVGTYVEPKDWN
ALISDPEVLLIDTRNDYEVAIGTFKGAIDPKTETFREFPEYIKANFDPSKHKKVAMFCTG
GIRCEKASSYMLGEGFESVYHLKGGILKYFEEVPQEESLWDGDCFVFDNRVTVRHDLSEG
EYDQCHACRHPINAQERASEHYSPGVSCPHCWDSLSEKTRRSAIDRQKQIELAKARNLPH
PIGYYYKAEA