Protein Info for PP_1684 in Pseudomonas putida KT2440

Annotation: putative Transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 48 to 67 (20 residues), see Phobius details amino acids 79 to 101 (23 residues), see Phobius details amino acids 107 to 131 (25 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 168 to 192 (25 residues), see Phobius details amino acids 219 to 244 (26 residues), see Phobius details amino acids 251 to 275 (25 residues), see Phobius details amino acids 284 to 303 (20 residues), see Phobius details amino acids 309 to 331 (23 residues), see Phobius details amino acids 341 to 362 (22 residues), see Phobius details amino acids 374 to 393 (20 residues), see Phobius details PF07690: MFS_1" amino acids 23 to 332 (310 residues), 111.6 bits, see alignment E=2e-36

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1684)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88M90 at UniProt or InterPro

Protein Sequence (406 amino acids)

>PP_1684 putative Transporter (Pseudomonas putida KT2440)
MLEITTMTSVWRTSGWVLVGAALILALSLGVRHGFGLFLEPMSTDFGWGRGVFAFAIALQ
NLIWGLAQPFAGALADRLGAARVVIIGGILYAVGLILMGLADSPWSLSLSAGLLIGIGLS
GTSFSVILGVVGRAVPAEKRSMAMGIASAAGSFGQFAMLPGTQGLIQWLGWSAALLVLGL
LVAFIVPFVCLLRDRPLPSHGAEQTLGQALREACTHSGFWLLALGFFVCGFQVVFIGVHL
LAYLVDQHLAAATGTTVLALVGLFNIVGTFTAGWLGGRMSKPRLLTGLYLLRAVVIVLFL
WAPVSEFSAYLFGIAMCLLWLSTVPLTNGTVATVFGVRNLSMLGGIVFLFHQLGAFLGGW
LGGVVYDRTGSYDLVWQISILLSLLAAALNWPVRERPVSRLQAQAV