Protein Info for PP_1667 in Pseudomonas putida KT2440

Annotation: putative Transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 transmembrane" amino acids 7 to 39 (33 residues), see Phobius details amino acids 56 to 80 (25 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 210 to 235 (26 residues), see Phobius details amino acids 238 to 263 (26 residues), see Phobius details amino acids 270 to 295 (26 residues), see Phobius details amino acids 306 to 336 (31 residues), see Phobius details PF01594: AI-2E_transport" amino acids 12 to 338 (327 residues), 179.9 bits, see alignment E=3.7e-57

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1667)

Predicted SEED Role

"Putative permease often clustered with de novo purine synthesis" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88MA7 at UniProt or InterPro

Protein Sequence (357 amino acids)

>PP_1667 putative Transporter (Pseudomonas putida KT2440)
MTDMRRWIWLGAALLIAVLLYSLHNILTPFLVGIMLAYLADPLVDRLERLGLSRTWGVVV
VFGLFTLLLLALLLVLVPMLAKQLVRLYELAPQMLDWLEHVALPWVQGRLGLADGFWKFD
KIKAAIGAHMGQTTDIVGMLLSQATASSLALVAWLANMVLIPVVGFYLLRDWDLMMGKLR
GLLPRQREPQVMGLAGECHEVLGAFVRGQLMVMLALGVIYSAGLMLVGLELGLLIGMLAG
LAAIVPYMGFIIGIGAALVAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLVGDRIG
LHPVAVIFAILAGGELFGFTGVLLALPVAAVIMVLLRHVHDLYKESDMYAGNIDPEL