Protein Info for PP_1517 in Pseudomonas putida KT2440

Annotation: RND efflux transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1021 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details transmembrane" amino acids 336 to 355 (20 residues), see Phobius details amino acids 361 to 382 (22 residues), see Phobius details amino acids 388 to 412 (25 residues), see Phobius details amino acids 428 to 451 (24 residues), see Phobius details amino acids 464 to 486 (23 residues), see Phobius details amino acids 534 to 552 (19 residues), see Phobius details amino acids 866 to 884 (19 residues), see Phobius details amino acids 891 to 911 (21 residues), see Phobius details amino acids 917 to 938 (22 residues), see Phobius details amino acids 963 to 984 (22 residues), see Phobius details amino acids 991 to 1015 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 7 to 1013 (1007 residues), 571.4 bits, see alignment E=1.8e-175

Best Hits

KEGG orthology group: None (inferred from 98% identity to ppg:PputGB1_1123)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88MQ3 at UniProt or InterPro

Protein Sequence (1021 amino acids)

>PP_1517 RND efflux transporter (Pseudomonas putida KT2440)
MGFNLSAWALRNRQIVLFLMILLAAIGAMSYTKLGQSEDPPFTFKAMVIRTLWPGASAEE
VARQVTERIEKKLMETGEYERIVSFSRPGESQVTFMARDSLHSKDIPELWYQIRKKVADI
RHTLPPEIQGPFFNDEFGTTFGNIYALTGEGFDYAVLKDYADRIQIQLQRVKDVGKVDLI
GLQDEKVWIELSNLKLATLGVPLEAVQKALQEQNAVSTAGFFETPSERLQLRVSGRFDSV
EQIRQFPIRVGDRTFRIGDVAEVHRGFNDPPAPRMRFMGEDAIGLAVSMKDGGDILVLGK
ALEGEFERLAHNLPAGMALRKVSDQPAAVKAGVGEFVQVLVEALVIVLLVSFFSLGLRTG
LVVALAIPLVLAMTFAAMHYFGIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQGYD
RLKAASYAWTSTAFPMLTGTLITAAGFLPIATAASSTGEYTRSIFQVVTIALLTSWVAAV
VFVPYLGERLLPDLAKLHAARHGKDGHAPDPYATPFYQRVRRLVEWCVRRRKTVILLTIA
AFVGSILLFRFVPQQFFPASGRPELMVDLKLAEGASLANTAERVKQLEALLKQQDGIDNY
VAYVGTGSPRFYLPLDQQLPAASFAQFVVLAKSMEDRERLRSWLISTVDQQFPDLRARVT
RLENGPPVGYPVQFRVTGEHIEKARALAREVADKVRENPHVVNVHLDWEEPSKAVFLEID
QDRARALGVSTSHLASFLQSSLIGTTVSQYREDNELIEILLRGTLQERSELANLGSLALP
TDNGQSVALSQVATLEYGFEEGIIWHRNRLPTVTVRADIYDQEQPATLVKQILPTLQEIR
AKLPDGYLLEVGGTVEDSERGQKSVNAGMPLFIVVVLSLLMIQLRSFSRTVMVFLTAPLG
LIGVTLFLLVFRQPFGFVAMLGTIALAGMIMRNSVILVDQIEQDIAAGMERWQAIIEATV
RRFRPIVLTALAAVLAMIPLSRSVFYGPMAVAIMGGLIVATVLTLLFLPALYAAWFRVKK
G