Protein Info for PP_1234 in Pseudomonas putida KT2440

Annotation: putative permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 transmembrane" amino acids 20 to 52 (33 residues), see Phobius details amino acids 69 to 93 (25 residues), see Phobius details amino acids 156 to 177 (22 residues), see Phobius details amino acids 218 to 248 (31 residues), see Phobius details amino acids 250 to 270 (21 residues), see Phobius details amino acids 279 to 301 (23 residues), see Phobius details amino acids 307 to 333 (27 residues), see Phobius details PF01594: AI-2E_transport" amino acids 21 to 345 (325 residues), 234.1 bits, see alignment E=1.2e-73

Best Hits

KEGG orthology group: K03548, putative permease (inferred from 100% identity to ppf:Pput_1264)

Predicted SEED Role

"Putative permease PerM (= YfgO)" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88NH5 at UniProt or InterPro

Protein Sequence (356 amino acids)

>PP_1234 putative permease (Pseudomonas putida KT2440)
MFKVLRDWVQRYFSDEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAFLMQGLVNALE
RVRVPTRLAVMLVFALFMGALAVFMLVLVPLLWHQLITLFNELPGMLGKWQSLLLLLPER
YPHLVSDEQVLHAIESVRGEIGKFGQWALTFSLSSLPLLVNAMIYLVLVPILVFFFLKDR
ELIGRWVSGYLPRQRTLLNRVGSEMNRQIANYIRGKGIEILICGIATYIAFISLGLNYAA
LLALLVGLSVVVPYVGAVVVTVPVTLIALFQWGWGDQFIYLMTVYAIIQALDGNVLVPLL
FSEAVSLHPVAIICAVLLFGGLWGFWGIFFAIPLATLIKAVLDAWPKQEPSVSPML