Protein Info for PP_1126 in Pseudomonas putida KT2440

Annotation: putative Hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 782 signal peptide" amino acids 40 to 42 (3 residues), see Phobius details transmembrane" amino acids 43 to 59 (17 residues), see Phobius details PF17992: Agarase_CBM" amino acids 105 to 237 (133 residues), 31.9 bits, see alignment E=1e-11 PF02449: Glyco_hydro_42" amino acids 546 to 691 (146 residues), 21.7 bits, see alignment E=1.2e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_1126)

Predicted SEED Role

"hydrolase, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88NS8 at UniProt or InterPro

Protein Sequence (782 amino acids)

>PP_1126 putative Hydrolase (Pseudomonas putida KT2440)
MRCRRSGGKFPDRRSTCAGALSITRLGPIRVLKESLSLMIRRTLPAVFALLCSSPLLAGQ
QTLFSFVRPASVVNVATVDASMPQYNAEQTAEGEVLRRVVFNPAQQPTLRLSPQSGVWDW
SAGQFLTLRLQSAMDWALTVDVTVQGSDGRVLTSRIDLPAGPAQTVMVPLTASSPLDQGM
RAGPPMPWNHGGQRLLLTSSAGAVDLKQVTSVSLSIPSPKVAQSLLIERVGIQDDDQAYR
AAYHELIDAYGQSTRGNWPEKVSSDEQLKAADTREQQQLKGWLAERGKQKLDAYGGLVGG
PAFAAKGFFRTEKRDGRWYLVTPDGHPFYSLGVNAVAADGGRTYVAGREGMFKALPAEGD
ALAAFYGESNNDDGNASSQGRNFKQGRWFDFYAANLQRTYGKPCRPAVEGQPADCAPPVL
DADRWQAHALDRLQAWGFNTVGNWSEPALGQARRMPYTLPLSIVGDYASISTGMDWWGRM
PDPFDPRFAMATERAVAIAARDHRDDPWLIGYFADNELAWAAPGSDPKSRYGLAYGTLRL
TTDVPAKRAFLKQLRDKYRNQEGLSKAWGIELTAWELMEDPGFEAPLPDPEHPEIERDYQ
HFQRVFAETYFKTISDSLKWHAPNHMLLGGRYAVSTPEAVKACAEFCDVLSFNFYTLKPQ
DGYDFARLAELDKPVLVSEFQFGSRDRGPFWPGPLELAREEDRGPAYANFLKAAMAQPMI
VGAHWFQYLDQPASGRLLDGENGHLGLVAITDMPYPGFVDAVRKSNLQTMNQLRAELEKP
AP